Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i17f
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50580.1 68414.m05679 glycosyltransferase family protein simi...    28   2.9  
At2g41700.1 68415.m05151 ABC transporter family protein similar ...    28   3.9  
At1g64910.1 68414.m07358 glycosyltransferase family protein cont...    28   3.9  
At1g08140.1 68414.m00896 cation/hydrogen exchanger (CHX6a) Note:...    28   3.9  
At1g22620.1 68414.m02824 phosphoinositide phosphatase family pro...    27   6.8  
At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR...    27   9.0  
At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin ...    27   9.0  
At1g69220.2 68414.m07926 serine/threonine protein kinase, putati...    27   9.0  
At1g27200.1 68414.m03313 expressed protein contains Pfam PF01697...    27   9.0  

>At1g50580.1 68414.m05679 glycosyltransferase family protein similar
           to UDP rhamnose: anthocyanidin-3-glucoside
           rhamnosyltransferase GB:CAA81057 GI:397567 from [Petunia
           x hybrida]; contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 448

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +3

Query: 162 EFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 326
           +FL+ R N W N  E G V   A       +  QF+ F +        F + V+P
Sbjct: 236 KFLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELMGLPFLISVMP 290


>At2g41700.1 68415.m05151 ABC transporter family protein similar to
           ATP-binding cassette transporter ABCA1 GI:18031705 from
           [Arabidopsis thaliana]
          Length = 1822

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +3

Query: 240 FLSMKVTQFEYFTVNKRTSLFGFFVIVVPMFTFGTLIWNERTQREQKIRSG--ELRYKDR 413
           F + + T  E+ ++ K  S+ G   ++  +F    LI     ++EQKIR G   +  KD 
Sbjct: 237 FPTREYTDDEFQSIVK--SVMGLLYLLGFLFPISRLISYSVFEKEQKIREGLYMMGLKDE 294

Query: 414 LFKLA*SLMNLYTI 455
           +F L+ ++M  + I
Sbjct: 295 IFHLSCAIMLSFMI 308


>At1g64910.1 68414.m07358 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 447

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 168 LKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVVP 326
           L+ R + W N  E G V   AL   ++++  QF+   +    +   FFV V P
Sbjct: 237 LEDRWSHWLNGFEQGSVVFCALGSQVTLEKDQFQELCLGIELTGLPFFVAVTP 289


>At1g08140.1 68414.m00896 cation/hydrogen exchanger (CHX6a) Note:
           CHX6a and CHX6b were originally 1 gene but were split
           pased on alignments with other family members; may be a
           pseudogene and requires futher investigation; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 818

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +3

Query: 273 FTVNKRTSLFGFFVIVVPMFTFGTLIWNERTQREQKIRSGELRYKDRLFKLA*SLMNLYT 452
           F   KR+S+ GF  +++P+   G+L +     RE++  S  LR + RL     S+    +
Sbjct: 149 FRTEKRSSVIGFITVIIPLIC-GSLTFR---YRERRGDSSILRMEYRLIIFLQSISAFTS 204

Query: 453 IENI 464
           I+ +
Sbjct: 205 IDTL 208


>At1g22620.1 68414.m02824 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to cDNA SAC domain
           protein 1 (SAC1)  SAC1-FRA7 allele, GI:31415718
          Length = 912

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 78  NMANNYGLSDAELNLIKTQASRRAEM--RREF 167
           ++ N YG     LNLIKT   R  EM  RREF
Sbjct: 347 DLVNRYGNPIIVLNLIKTVEKRPREMVLRREF 378


>At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1187

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 236 LQCCVENITSLRSVFPGVCSLFQELPS 156
           L   + NIT+L+S++   CS  +ELPS
Sbjct: 887 LPSSIWNITNLQSLYLNGCSSLKELPS 913


>At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin
           family protein / PAN domain-containing protein contains
           Pfam profiles: PF01453 lectin (probable mannose
           binding), PF00024 PAN domain
          Length = 764

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 365 RSLVPYQGTKCKHGYNNNK-KSKQTSSLVYGKIFKLCYFHGQKPLQCCVEN 216
           + LVPYQ   CK G+N  K K+ +   +       +     Q+  + C+EN
Sbjct: 322 KCLVPYQKPGCKSGFNMVKFKNLELYGIYPANDSVISQISSQRCKKLCLEN 372


>At1g69220.2 68414.m07926 serine/threonine protein kinase, putative
           identical to serine/threonine kinase [Arabidopsis
           thaliana] gi|2352084|gb|AAB68776
          Length = 809

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -3

Query: 404 VTELSTANLLFTLRSLVPYQGTKCKHGYNNNKKSKQTSSLVYGKIFK 264
           V  +  +N     R L P   +   HG +N K  +Q     YG ++K
Sbjct: 192 VASMQKSNFGGKTRKLDPSSSSSKLHGEDNRKMQQQNRKGSYGSVYK 238


>At1g27200.1 68414.m03313 expressed protein contains Pfam PF01697:
           Domain of unknown function
          Length = 575

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +2

Query: 305 IFCYCCTHVYIWYLDMERENAA*TEDSQWRAPLQRQTLQASLITDELVHNRKY 463
           I C+CC  V +++L  +R +         R  L+  TL     + +  H  ++
Sbjct: 29  ILCFCCFFVLLFFLSSDRISTLSVRSDSLRPSLRVPTLSVLSSSMDSFHRGRF 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,023,216
Number of Sequences: 28952
Number of extensions: 200345
Number of successful extensions: 560
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)