Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i16r
         (665 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q386F4 Cluster: Putative uncharacterized protein; n=1; ...    34   3.5  
UniRef50_Q9TB46 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    33   8.2  

>UniRef50_Q386F4 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 435

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 544 VPTRGPGTALSLFVFDYGKYI-ICNIILWYCILTVV*KTLSNLGSGPADRPSA 389
           V  RG  +  + FVFD+G +I +CNI+    I   +   L+++G  PAD  +A
Sbjct: 354 VKGRGRPSVTNDFVFDFGAFISVCNIVRREVITVDLRCLLTSVGESPADATTA 406


>UniRef50_Q9TB46 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=1; Platynereis dumerilii|Rep: NADH-ubiquinone
           oxidoreductase chain 2 - Platynereis dumerilii
           (Dumeril's clam worm)
          Length = 328

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 330 LL*LLTSIVIEIFVYFNLFFLISQSISKMKCSAPPPGRSVVVT-LC 196
           L+ L+T  ++ +F YF++ F     +     SAP PG ++++T LC
Sbjct: 274 LITLITGSLLNLFYYFSMLFNFITMMKTCSNSAPTPGANLILTSLC 319


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,275,971
Number of Sequences: 1657284
Number of extensions: 9977132
Number of successful extensions: 20955
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20948
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)