Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i16r
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30845.1 68414.m03772 expressed protein                             30   1.6  
At4g22180.1 68417.m03206 F-box family protein contains F-box dom...    27   8.5  

>At1g30845.1 68414.m03772 expressed protein
          Length = 124

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 505 VFDYGKYIICNIILWYCILTVV*KTLSNL 419
           V  YG  +ICN+++W C +  + + LS+L
Sbjct: 35  VIKYGLVVICNVVMWACYVNSL-RALSSL 62


>At4g22180.1 68417.m03206 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 64  ISVDKLTNICN-ITYANLSAAGGMCSSAHPLRAQ*ILPQVHNLNLAQRYDYRSS 222
           + +D LT +   ++YAN   A  +CSS H    Q +  Q+  L L   YD  +S
Sbjct: 24  LPLDLLTAVFERLSYANFQRAKSVCSSWHSGSRQSVPIQIPWLILFPEYDNNNS 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,885,868
Number of Sequences: 28952
Number of extensions: 213017
Number of successful extensions: 666
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)