Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i15r
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59633| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      29   4.9  
SB_31971| Best HMM Match : Tyrosinase (HMM E-Value=3e-06)              28   8.6  
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)                28   8.6  

>SB_59633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 543 EINIALSSNLQVLKLKTLVVFLHPSVGHTI 632
           +I ++LS N+++L +  L+  L PSV H I
Sbjct: 163 KIRVSLSMNIRILAVTVLLALLAPSVTHAI 192


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 108  ERSGVAILERSGFMTSNRDQRMTITPQTEYSACLSYYLHTETNY 239
            E+ G+ ILE S    S+ DQR     +T+   C  Y L+TE +Y
Sbjct: 996  EKRGLNILEVSVISRSSADQRKGRAGRTDSGKC--YRLYTEKDY 1037


>SB_31971| Best HMM Match : Tyrosinase (HMM E-Value=3e-06)
          Length = 364

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 119 SGHIGAFRV-YDE-QPRPEDDNYSPDRVLSMPILL 217
           SG  G  +V YD+ +PRP D+ Y P    + PI L
Sbjct: 303 SGQPGKVKVVYDDPEPRPRDEEYDPSVPDARPIFL 337


>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
          Length = 595

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/81 (25%), Positives = 33/81 (40%)
 Frame = +3

Query: 174 TITPQTEYSACLSYYLHTETNYVLYNYSELLNRILNNPCK*QYPNVSRPNLSYHSSKCNT 353
           T+TP           +  E  YV++N          +P    + +  RP  S   SKC++
Sbjct: 251 TVTPVVSAPVTFKNEIKDEIPYVVWNNG--------SPPVGDFKDGWRPQESTSPSKCDS 302

Query: 354 SAPRHHFSAAKLHVWRYHEIG 416
           S+   HF   K   W + E+G
Sbjct: 303 SSSFLHFLKKKNISWGFDELG 323


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,462,415
Number of Sequences: 59808
Number of extensions: 433966
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)