Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i15r
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con...    29   4.0  
At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein con...    29   4.0  
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con...    28   5.3  
At2g44470.1 68415.m05529 glycosyl hydrolase family 1 protein con...    28   5.3  
At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative (CH...    27   9.3  

>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to anther-specific protein ATA27 (GI:2746341)
           [Arabidopsis thaliana]
          Length = 534

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 169 LWSRLLVINPERSNMATPLLSYSFSHRYKTD 77
           +W       PER+NM    ++  F HRYK D
Sbjct: 65  IWDNFTHAFPERTNMDNGDVAVDFYHRYKDD 95


>At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966) [Prunus serotina]
          Length = 534

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 169 LWSRLLVINPERSNMATPLLSYSFSHRYKTD 77
           +W       PER+NM    ++  F HRYK D
Sbjct: 65  IWDNFTHAFPERTNMDNGDVAVDFYHRYKED 95


>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Cyanogenic Beta-Glucosidase
           (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
           beta-glucosidase GI:10834547
          Length = 577

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 169 LWSRLLVINPERSNMATPLLSYSFSHRYKTD 77
           +W    +  PER+ M    ++  F HRYK D
Sbjct: 59  IWDHFSLTYPERTKMHNADVAIDFYHRYKDD 89


>At2g44470.1 68415.m05529 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to anther-specific protein ATA27 (GI:2746341)
           [Arabidopsis thaliana]
          Length = 451

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 169 LWSRLLVINPERSNMATPLLSYSFSHRYKTD 77
           +W       PER+NM    ++  F HRYK D
Sbjct: 62  IWDYFSHTFPERTNMQNADVAVDFYHRYKDD 92


>At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative
           (CHX26) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 780

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 595 KVFSFSTCRLELSAIFISI*VLWMFFLSKDTFDQYCH 485
           K+ +    RL LS+I ++    W FFL   TFD + H
Sbjct: 192 KMLNSEPGRLALSSIMVANCFGWGFFLLLITFDSFLH 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,620,879
Number of Sequences: 28952
Number of extensions: 292832
Number of successful extensions: 621
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)