Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i15f
(587 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_13793| Best HMM Match : Helicase_C (HMM E-Value=5.6) 29 2.8
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.7
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 3.7
SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_44999| Best HMM Match : RepA_N (HMM E-Value=1.9) 27 8.6
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 31.1 bits (67), Expect = 0.70
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Frame = +2
Query: 236 DPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQR--FTNG- 406
DP + + VY+ + S ++ FK + Y + + E+ P TF V+K R +NG
Sbjct: 1251 DPVDPRWSAAVVYVEVLDSNDNAPVFKKQSYVVEMVEHSPTTFTVVKVEATDRDVGSNGR 1310
Query: 407 -GNKLVNINLSDSDQLLSYSNVL---GDLDIPKVKKQSL 511
+V+ N+ + + S S V+ D+D K+++ L
Sbjct: 1311 ISYSIVSGNVDGAFVIDSSSGVIKPAQDIDREKIQRYLL 1349
>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 113 PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPE 256
PE S SGS + L FS ++ S +E+ W LL+TD +N P+
Sbjct: 405 PEMNSSSGSPSCLDVL--SCFSVNVASS-KESKFWCELLVTDKYNAPD 449
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 389 QRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDI-PKVKKQSLQHLKSSVEEDFQFLSELA 565
QRFT NK+V + LS + ++ Y L +LD+ + +Q L+ +E E
Sbjct: 2053 QRFTGELNKIVLLLLSLTQRMHRYEKTLSELDMSEEADRQQRDILQEKIEYVKNQYEEAC 2112
Query: 566 ALKAVTE 586
+K V +
Sbjct: 2113 KIKEVND 2119
>SB_13793| Best HMM Match : Helicase_C (HMM E-Value=5.6)
Length = 146
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 371 LKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLK 523
L+HR+ FT G+ VNIN+SD + + +VLG+ I + + L L+
Sbjct: 53 LRHRMGF-FTKSGD--VNINVSDVNNIAFSRSVLGNPTISRARGYQLHQLE 100
>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1273
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 311 FKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 472
FKS K P ++DE + D+LK + +F + +N DSD++ + +L
Sbjct: 1017 FKSTKNPPLIDELKDFEDDMLKMIQSVKFIEASSPFLNKLKEDSDRIKNKPKLL 1070
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = -1
Query: 221 HSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDYGGCLVR 90
H+I S++Q G + + +K + W++ ++T ++GG L++
Sbjct: 374 HNIVSTIQCAGNRRSDMNRVKKVKGLDWSEGAISTAEWGGALLK 417
>SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -3
Query: 198 TERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEAL-IPIIEEIKK 52
T RP+ A+ + +RL +V+ P+K+ND +S EA I +++ +++
Sbjct: 314 TSRPKFADIV--RRLDEVIRSPDKMNDEFAGSRISRAEATNIAMVKSVEE 361
>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 296 GSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNI 427
GS+ D + ++ +++D EP+T ++ + +I GGN++ +I
Sbjct: 279 GSAEDVQKAEH-IIMDMIEPETVELKESQIGMVIGKGGNRINSI 321
>SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 122 LSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVEVYISGISSLGS 301
L FS +S+T+ S I A+L ++E ++ P N+ + +SG SLG
Sbjct: 311 LIFSTASQTWSSGFSSIMCATLEHYLDE------FILAGPANSQYCAATLSLSGSVSLGV 364
Query: 302 SADFKSKKYPLVV 340
S +YP V+
Sbjct: 365 PLHPASIRYPSVI 377
>SB_44999| Best HMM Match : RepA_N (HMM E-Value=1.9)
Length = 402
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 310 ISGTPQTGYATNVNFDNCFRSV 245
ISG PQ G+A ++ NCF+++
Sbjct: 230 ISGDPQQGHAVFISAINCFQNI 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,552
Number of Sequences: 59808
Number of extensions: 312545
Number of successful extensions: 1068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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