Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i14r
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0540 + 4269373-4269563,4269636-4269717,4269736-4269889,426...    28   3.5  
01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633     27   6.1  
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717...    27   8.1  

>11_01_0540 +
           4269373-4269563,4269636-4269717,4269736-4269889,
           4269948-4269972,4270838-4270976,4271076-4271261,
           4271379-4271442,4271544-4271659
          Length = 318

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 66  AYRLGLTKTKTGESFESHVPSFFDWGE-WSPLFSVSEIFTKRSLNFFSTLSSEMDLSTSS 242
           A + GL+ T   +  +  +P  +   + +  +F V + F    LNF +    E+      
Sbjct: 197 AIKGGLSSTSLEQVSDPSLPLCWKGQKAFESVFDVKKEFKSLQLNFGNNAVMEIPPENYL 256

Query: 243 IVVPVGRTCLPVVYGVSLAY 302
           IV   G  CL +++G  L +
Sbjct: 257 IVTEYGNVCLGILHGCRLNF 276


>01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633
          Length = 171

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 248 RAGGKDLLACGVRRLLG 298
           RAGG+ LLA G+RR+LG
Sbjct: 3   RAGGRRLLAPGLRRVLG 19


>07_01_0863 +
           7177443-7177471,7178300-7178399,7178628-7178899,
           7179143-7179794,7179886-7180085,7180317-7180417,
           7180559-7181697
          Length = 830

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 308 PSVRQGDAVHHRQAGPSHR 252
           P++ Q + +HHRQ  P+H+
Sbjct: 787 PAIDQQEPLHHRQENPAHK 805


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,776,256
Number of Sequences: 37544
Number of extensions: 218780
Number of successful extensions: 585
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)