Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i14f
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 45   RRHNYHKQNHVCPN 86
            RRH Y + NH  PN
Sbjct: 1685 RRHMYEELNHCAPN 1698


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 164 IPSKTFLGVALTVLSLIASDNSLTVTVGTDMILFVIVMS 48
           IP+ T + + LTVL L +      +    ++I  ++ MS
Sbjct: 261 IPAVTMMLLTLTVLWLDSRSTERMIAASVNLICHILCMS 299


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +1

Query: 91  TVRELSDAINDNTVNATPKKVLEGILNDYMDL 186
           T    +  ++DN+++++ +K+ + ILN   D+
Sbjct: 340 TAMNSNQIVSDNSLSSSEEKLKQDILNLRTDI 371


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 164 SSTTTWTFSTPRRRRTPQASRSFPP 238
           ++TTT T +T     T  AS + PP
Sbjct: 666 TTTTTTTTTTTTPNTTQNASATTPP 690


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,171
Number of Sequences: 438
Number of extensions: 2406
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)