Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i13f
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 28 0.91
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 28 0.91
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 3.7
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 26 3.7
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 4.8
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 25 6.4
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 8.5
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 25 8.5
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 25 8.5
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 28.3 bits (60), Expect = 0.91
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +3
Query: 126 YYYSNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTS 305
YY++ A SI ++ F +GN + + ++ I + + + T I PIV S
Sbjct: 94 YYFNPAGLYSIIISAREFASGNLLSLDQSRHFSIQATLSATTSGSGTIILPIVAGMGFVS 153
Query: 306 GDYNVIVVDWSSFSLSTYSTAV 371
G Y + ++S L + T +
Sbjct: 154 GYYTNLTPVFNSSILFSSITKI 175
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 28.3 bits (60), Expect = 0.91
Identities = 27/104 (25%), Positives = 46/104 (44%)
Frame = +3
Query: 228 VVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIAT 407
V+I HG G+ + K F D ++ +D S A ++ + +
Sbjct: 23 VLIFHGLLGSKRNWRSLAKK--FSCKLDRDIYAIDQRCHGDSP-CVAPLSYSAMALDAFQ 79
Query: 408 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 539
F+K+ KL +K I+G ++GA A VT KV ++ +D S
Sbjct: 80 FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS 121
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 586 ASFVPSRSTLFSQSRAEGSRPVILATLPSK 497
+ F +FS EGSRPV LA L S+
Sbjct: 461 SGFSVREEAVFSSPTTEGSRPVSLARLKSE 490
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 81 DAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVI 236
DAI+ +E+ NK +A N+IT D G+D +F +WD +V+
Sbjct: 216 DAIEFMEKNVEKNK-----SAMSNNIT--SDILVWGHDIPRKFRRHWDYIVM 260
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 4.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAARFN------NNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T DIV + G++GT T+T+
Sbjct: 848 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 906
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 907 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 943
Score = 25.8 bits (54), Expect = 4.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAARFN------NNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T DIV + G++GT T+T+
Sbjct: 892 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 950
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 951 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 987
Score = 25.8 bits (54), Expect = 4.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAARFN------NNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T DIV + G++GT T+T+
Sbjct: 936 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 994
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 995 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1031
Score = 25.8 bits (54), Expect = 4.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAARFN------NNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T DIV + G++GT T+T+
Sbjct: 980 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 1038
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 1039 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1075
Score = 25.8 bits (54), Expect = 4.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAARFN------NNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T DIV + G++GT T+T+
Sbjct: 1024 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 1082
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 1083 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1119
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 156 SNFSVHCYSNNIYLNFQIAP 97
+NF+ C N +LNFQI P
Sbjct: 417 NNFTSTCAFENSHLNFQITP 436
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 466 PRLKPTMCTLLSGNLRFFKKVAILDPTPVTAITAVEYVDKLNDDQ 332
P+ P + LLS L+ K+V L +TA TA V+ N+D+
Sbjct: 173 PKSDPEITQLLSRRLKLEKEVRNLQEQLITAETA-RKVEAKNEDK 216
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 307 PLVKNASLTIGLIVVVAVPL*PCIITTISQLLLKRAAVSFPVGKWSSVSVIEF 149
P+ +A L IGL+ +++ L +TT L + A P K+ SV I F
Sbjct: 163 PVYASADLWIGLVYNISITLSLYSLTTFWVCLHEELAPFRPFPKFLSVKAIIF 215
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 226 ISQLLLKRAAVSFPVGKWSSVSVIEF 149
++Q L+ R P+GKWS V + F
Sbjct: 279 LAQALINRGVNLEPIGKWSKVGLQVF 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,133
Number of Sequences: 5004
Number of extensions: 51868
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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