Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i13f
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911... 38 0.008
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267... 33 0.23
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 31 0.93
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533... 30 1.6
07_01_0672 - 5041742-5043175 29 2.2
03_06_0035 - 31201115-31203646 28 6.6
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779... 27 8.7
06_03_1043 - 27097094-27097735 27 8.7
>03_02_0523 +
9112577-9112608,9112626-9113251,9113696-9113747,
9114713-9114782
Length = 259
Score = 37.5 bits (83), Expect = 0.008
Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Frame = +3
Query: 81 DAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTA 260
D+I +E L + S++ N+I+ D F + + ++WD+ + + H G
Sbjct: 100 DSINGIESHKMLKVQAFSSSSSSNNIS--SDAFTSSRSNGTKDTDSWDMQHLEYDHPGLM 157
Query: 261 TTTINPIVKDAFLTSGDYNVIVV-DWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLN 437
+ +++A+ G Y+V++ D +S + + V+ + I L L N
Sbjct: 158 LLPYDDDIEEAYDVLGQYDVVMKNDLASGDVDGSAAGVIDEKLYSNGIEDLL-ILPRGQN 216
Query: 438 KVHIVGFNLGAHV 476
+H+V N+ H+
Sbjct: 217 SIHVVYANIVCHL 229
>11_06_0023 -
19325966-19326046,19326132-19326248,19326635-19326703,
19326922-19327119,19327388-19327591,19327688-19327828,
19328416-19328625,19329330-19329944
Length = 544
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = +3
Query: 282 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFN 461
++D + D NV + +L + A +A + IA +LKN KL ++++ +
Sbjct: 379 MQDVLFLANDDNV--ARFFDSTLEHGADAKLAANWIMGDIAAYLKNEKLSIDEIKLTPLE 436
Query: 462 LGAHVAGVTGRNLEGKVAR 518
L +A + + GK+ +
Sbjct: 437 LSELIASIRNGTISGKIGK 455
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 269 RRRSSATVTVYYYDNIPIIVKARSSIVSSGKVVFGECNRISL 144
R R S T+ +NIP+++ SS + K V G+ R+SL
Sbjct: 637 RLRLSKAPTIQNKENIPVMLNKGSSGADTSKAVAGKARRVSL 678
>05_03_0376 -
13252220-13252354,13252433-13252541,13253279-13253337,
13253608-13253700,13254078-13254153,13254405-13254467,
13254535-13254629,13254743-13254845,13254930-13255024,
13255098-13255156,13255445-13255656,13256090-13256222,
13256691-13257081
Length = 540
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 54 AFAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFP 182
A F + + ++++ R L+K + SNA+ I +TED FP
Sbjct: 216 AQGFDSQSSSSVKSSTRDEKLHKSFQISNAENEQILVTEDDFP 258
>07_01_0672 - 5041742-5043175
Length = 477
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +3
Query: 141 AQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNV 320
A++ I D F G D AR W ++HG GT +T+ + + DY++
Sbjct: 217 AKKKDIMDDLDAFRDGKDYYARIGKAWKRGYLLHGPPGTGKSTMIAAMANYL----DYDI 272
Query: 321 IVVDWSSFSLST 356
V+ +S + +T
Sbjct: 273 YDVELTSVATNT 284
>03_06_0035 - 31201115-31203646
Length = 843
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 156 ITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFL-TSGD 311
+ + +DH+ N T A F+ + D +V++H S AT NP++++ + T GD
Sbjct: 125 LPIPDDHY---NLTTATFSVSTDDMVLLHDFSFIATPP-NPVLREYIVATQGD 173
>08_02_1170 +
24876197-24877070,24877563-24877606,24877805-24877900,
24877999-24878544
Length = 519
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 439 LLSGNLRFFKKVAILDPTPVTAITAVEYVDKLNDDQSTTITL 314
+LS LRF K L PV + + + +DD +TT+ L
Sbjct: 393 ILSNGLRFLKGAPTLVIVPVACVFSGIMTEFTSDDSTTTLVL 434
>06_03_1043 - 27097094-27097735
Length = 213
Score = 27.5 bits (58), Expect = 8.7
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = -2
Query: 586 ASFVPSRST---LFSQSRAEGSRPVILATLPSKFLPVTPAT*APRLKPTMCTLLSGNLRF 416
A+F P+ ++ L S A G + ++LA ++ L P + PRL PT+ L +G
Sbjct: 95 AAFSPAAASAGLLAFLSDASGHKTLLLANPITRLLAALPISPTPRLSPTV-GLAAGPTSI 153
Query: 415 FKKVA---ILDPTPVTAITAVEYV 353
VA ++ P V I+A +V
Sbjct: 154 IAVVAGDDLVSPFAVKNISADTFV 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,537,421
Number of Sequences: 37544
Number of extensions: 310233
Number of successful extensions: 898
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -