Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i13f
(599 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26408| Best HMM Match : Lipase (HMM E-Value=0) 79 4e-15
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064) 71 5e-13
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41) 67 1e-11
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0) 30 1.6
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043) 29 3.8
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31) 28 6.6
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_22836| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
Length = 714
Score = 78.6 bits (185), Expect = 4e-15
Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 18/149 (12%)
Frame = +3
Query: 207 FNNNWDIVVIIHGHSG-TATTTINPIV-------KDAFLTSGDYNVIVVDWSSFSLSTYS 362
FN + V+IIHG +G T T+I V K+ L GD+NVI+VDW + ++
Sbjct: 101 FNASRRTVIIIHGFAGFTTLTSIRHEVNWWGFPMKNELLWEGDFNVIIVDWMRGAWFPFT 160
Query: 363 TAVMAVTGVGSSIATFLKNLK----LPLNKVHIVGFNLGAHVAGVTGRNLEGK---VARI 521
AV VG+ A L+ L+ L VH++GF+ GAHVAG GR ++ + + RI
Sbjct: 161 RAVANTRLVGAQTARLLQILEERSGRKLAYVHVIGFSFGAHVAGYVGRRMKKRGRMIDRI 220
Query: 522 TGLDPSARDW---ENNVLRLGTNDAQYVE 599
T LDP+A W + +RL T+DA +V+
Sbjct: 221 TALDPAAM-WFHKHHEDVRLDTSDALFVD 248
>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
Length = 131
Score = 71.3 bits (167), Expect = 5e-13
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Frame = +3
Query: 189 NDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFS--LSTYS 362
N TA F + +V+IIHG + + +++D L NVI VDW S + L+ Y
Sbjct: 15 NSTA--FRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQSGADGLNLYH 72
Query: 363 TAVMAVTGVGSSIATFLKNLK----LPLNKVHIVGFNLGAHVAGVTGRNLEGKVARIT 524
A VG+ +A + ++ L +VH++G +LGAHVAG G L GKV RIT
Sbjct: 73 VAAGNTRVVGAQLAELITTIQRVFDFDLRRVHLIGHSLGAHVAGYAGERLSGKVGRIT 130
>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
Length = 291
Score = 66.9 bits (156), Expect = 1e-11
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 10/116 (8%)
Frame = +3
Query: 282 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN-LKLPLNK----VH 446
+KD L D NVI+VDW + Y AV VG+ +A F+K L L ++ H
Sbjct: 115 MKDELLRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTILSLSGSREGGAFH 174
Query: 447 IVGFNLGAHVAGVTGRNLE--GK-VARITGLDPSARDWENNV--LRLGTNDAQYVE 599
+GF+LGAH++G G+ L+ G+ + RITGLDP+ ++ +RL DAQ+V+
Sbjct: 175 SIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPATLMFKGEAPDVRLDRLDAQFVD 230
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 62.1 bits (144), Expect = 3e-10
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Frame = +3
Query: 282 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKV----HI 449
++ A + D NVI DWS + Y A VG+ I +K L ++
Sbjct: 632 IRHALIKQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFLNNQTGNTPASFYL 691
Query: 450 VGFNLGAHVAGVTGRNLE---GKVARITGLDPSARDWEN-NV-LRLGTNDAQYVE 599
VGF+LGAH++G GR + K+ RITGLDP++ + N +V +RL +DA +V+
Sbjct: 692 VGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDADFVD 746
>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 198 AARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMA 377
A+ ++ VI HG++ + +T+ ++ A L D NV++ DW + Y A
Sbjct: 95 ASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKDDVNVVITDWGPGADGMYWQATAN 154
Query: 378 VTGVGS 395
VG+
Sbjct: 155 TRLVGA 160
>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 2497
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 237 IHGHSGTATTTINPIVKDAFLTSGDYNVIV---VDWSSFSLSTYSTAVMAVTGVGSSIAT 407
+ G T TTT N ++K A L +GDY V + VD+ + +YS + VT +
Sbjct: 58 VTGPRNTITTTKNALIKAASLKAGDYFVRLSASVDYVQ-GMVSYSYGFVRVTAAKPRV-K 115
Query: 408 FLKN 419
FL+N
Sbjct: 116 FLRN 119
>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Frame = +3
Query: 447 IVGFNLGAHVAGVTG---RNLEG-KVARITG 527
++GF+LG HVAG G +N G K+ RI+G
Sbjct: 21 VIGFSLGGHVAGYAGSRIKNTTGLKLGRISG 51
>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 399 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 539
+ +FL + + K H+ G ++G H+ GV +VA + + P+
Sbjct: 120 LLSFLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 166
>SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 282 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAV 371
+K+ L GD+NVI+VDW + ++ AV
Sbjct: 19 MKNELLWEGDFNVIIVDWMRGAWFPFTRAV 48
>SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)
Length = 183
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 408 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 539
FL + + K H+ G ++G H+ GV +VA + + P+
Sbjct: 1 FLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 44
>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
Length = 624
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 102 RFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTIN 275
R+ K Y + ++ R + + HF G++ A ++NN D+ + H + T IN
Sbjct: 548 RYSGCEKSYTHPSSLRKHL---KAHFKCGDNPAGIYDNNNDLETPVPPHRESKTARIN 602
>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 107 WKFK*ILLL*QCTEKFDYTHR 169
+K+ I LL C+EKFDY HR
Sbjct: 435 FKWDHIYLLDSCSEKFDYFHR 455
>SB_22836| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 27.5 bits (58), Expect = 8.8
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = -2
Query: 445 CTLLSGNLRFFKKVAILDPTPVTAITAVEYVDKLNDDQSTTITL*SPLVKNASLTIGLIV 266
C L GN+ ++ P+ I+ + ++ I++ S L +L +G I
Sbjct: 29 CALPLGNISMLSVLSCYCALPLGNISMLSFLSCYCALPLGNISMLSVLSCYCALPLGNIS 88
Query: 265 VVAVPL*PCIIT--TISQLLLKRAAVSFPVGKWSSVSVIEFLCAL 137
+++V C + IS L + + P+G S +SV+ CAL
Sbjct: 89 MLSVLSCYCALPLGNISMLSVLSCYCALPLGNISMLSVLSCYCAL 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,611,158
Number of Sequences: 59808
Number of extensions: 386369
Number of successful extensions: 1014
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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