Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i13f
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.14 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = -1

Query: 284 NNRVDRRRSSATVTVY-YYD-----NIPIIVKARSSIVSSGKVVFGEC 159
           N+ ++R   SA V +  YYD     N+   V   SSI SSG V  GEC
Sbjct: 126 NDYINRLNYSAFVNLTAYYDGGANLNLNGTVNCTSSIASSGVVSAGEC 173


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 297 LTSGDYNVIVVDWSSF 344
           + +GDY V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 297 LTSGDYNVIVVDWSSF 344
           + +GDY V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 275 VDRRRSSATVTVYYYDNIPIIVKARSSIVSSG 180
           VD+ R    VT+  YD +P  +   S     G
Sbjct: 70  VDQWRDKTFVTILRYDGVPSTLNVISGKTGKG 101


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 222 DIVVIIHGHSGTATTTINPIVK 287
           +IVVI H  SG +TTT + I K
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYK 30


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 222 DIVVIIHGHSGTATTTINPIVK 287
           +IVVI H  SG +TTT + I K
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYK 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,550
Number of Sequences: 438
Number of extensions: 3757
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)