Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i11r
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 31 1.2
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 31 1.2
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761... 30 2.1
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737... 29 4.9
03_04_0164 - 17893385-17893541,17893816-17893888,17894453-178946... 29 4.9
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485 28 6.5
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 28 8.6
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228... 28 8.6
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 706 GGAIAPINYHPYLAGLLIDINELQSPAACGGSIL 605
GGA+AP+ + +L++ + SP+ACGG L
Sbjct: 482 GGAVAPVPTWTLQSRMLMNGTSMSSPSACGGVAL 515
>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
Length = 778
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Frame = -2
Query: 611 DPYPCQHLNCSSLLVRWKKSCSTFHCRTGN-----PIPVPWWLKDSSV 483
+P L +W C H R+ N P P+PWW + SSV
Sbjct: 555 EPQTSHKAELMELRRKWGILCQRVHSRSHNDQASVPSPMPWWCRPSSV 602
>07_03_1619 +
28174991-28175804,28175945-28175968,28176075-28176170,
28176285-28176466,28176623-28176836,28177262-28177499,
28177709-28177865,28177950-28178246
Length = 673
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 217 YGNVVLDSNICTSGVGGVGICRGDSGGPL 131
YG+ V GV +CRGDS GPL
Sbjct: 66 YGSAAGSFGAAPDAVYGVALCRGDSKGPL 94
>10_04_0002 -
7372425-7372601,7372697-7372780,7372859-7373010,
7373229-7373324,7373406-7373554,7373723-7373788,
7373925-7373994,7374106-7374236,7376464-7376471,
7377946-7378002
Length = 329
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 328 AVAAGYGRYSDVIN-PTTNTMARNVFLQTISLETCRGYYG 212
+V G+GR S V+ PT N A N F +S T R Y+G
Sbjct: 176 SVIKGFGRGSKVLGIPTANLPAEN-FSDVLSEHTSRVYFG 214
>03_04_0164 -
17893385-17893541,17893816-17893888,17894453-17894612,
17894724-17894835,17895241-17895338,17895789-17896209,
17896398-17896549,17896914-17897122,17898000-17898087,
17899448-17899708
Length = 576
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 238 LETCRGYYGNVVLDSNICTSGVGGVGICRGDSGGPLTINHQGKEWLIGVSSFVARD 71
L GY + + +C GV V I G GG L + ++ GV + +ARD
Sbjct: 359 LSRSNGYLSELAAAAYVCNGGVQRVHIIDGTVGGSLLLELFTRD---GVGTMIARD 411
>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
Length = 483
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 556 FFHRTSNELQLRCWQG*GSIRRTRPVI 636
FF RT NEL + QG SIR T V+
Sbjct: 169 FFWRTENELDIGSGQGTSSIRSTSSVL 195
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 132 NGPPESPRQIPTPPTP 179
N PP PRQ P PP P
Sbjct: 423 NAPPHHPRQEPAPPHP 438
>04_03_0905 -
20722090-20722207,20722314-20722395,20722698-20722851,
20723026-20723089,20724282-20724404,20725326-20725452,
20725541-20726171
Length = 432
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -3
Query: 145 SGGPLTINHQGKEWLIGVSSFVARDGCELGFPSVFASVPSFRAWI 11
SGGP +++H G + + G + F VF S S + W+
Sbjct: 308 SGGPWSVDHIGVCFFYAFVKKIEEIGADYKFAFVFGSCVSLQFWL 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,871,110
Number of Sequences: 37544
Number of extensions: 546409
Number of successful extensions: 1820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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