Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i11r
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    35   0.063
At2g25010.1 68415.m02990 expressed protein                             29   4.1  
At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family...    28   7.2  
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi...    28   7.2  
At1g15110.1 68414.m01804 phosphatidyl serine synthase family pro...    28   7.2  
At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3) iden...    27   9.5  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    27   9.5  
At4g01630.1 68417.m00212 expansin, putative (EXP17) similar to a...    27   9.5  
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ...    27   9.5  
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing...    27   9.5  

>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 69  PSLATNELTPMSHSFPWWLIVNGPPESPR--QIPTPPTPLVQMLESKTTLP 215
           P+L  N L P   S P   ++  PP  P    +PTPPTP +  + +  TLP
Sbjct: 284 PTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPIPTIPTLP 334


>At2g25010.1 68415.m02990 expressed protein
          Length = 509

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 629 GRVRRIDPYPCQHLNCSSLLVRWKKSCSTFHCRTG 525
           G  R+I P    +   S+L+ RW++  +TFH   G
Sbjct: 61  GYFRKIGPMSLNNSLISALVERWRRETNTFHLPLG 95


>At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family
           protein sequencing discrepancy between cDNA and genomic
           sequence prevents representation of entire coding
           sequence
          Length = 578

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 138 PPESPRQIPTPPTPLVQMLESKTTLP**PRQVSKDIVCRKTFL 266
           PP  P+ I  PP+  +    SK+ LP  PR  +   +  K+ L
Sbjct: 480 PPPPPKTIAPPPSKTMSPPSSKSMLPPPPRSKTMSPLSSKSML 522


>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
           to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
           associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
           splicing factor SF3b 49 kDa subunit) {Homo sapiens};
           contains Pfam profile PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 363

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/71 (30%), Positives = 27/71 (38%)
 Frame = +3

Query: 18  ALKEGTLAKTDGKPNSQPSLATNELTPMSHSFPWWLIVNGPPESPRQIPTPPTPLVQMLE 197
           A K+ T  +  G P  +   ATN     S   P  L   GPP S  Q+   P P      
Sbjct: 189 AYKKDTKGERHGTPAERLLAATNPTAQKSR--PHTLFAMGPPSSAPQVNGLPRPFANGSM 246

Query: 198 SKTTLP**PRQ 230
               +P  PRQ
Sbjct: 247 QPVPIP-APRQ 256


>At1g15110.1 68414.m01804 phosphatidyl serine synthase family
           protein contains Pfam profile: PF03034 phosphatidyl
           serine synthase
          Length = 425

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 391 AVQPIPLATDSLLSTDKAGMWAVAAGYGRYSDVINPTT 278
           A+ P    +D L+++ K G+WA+ A +  YS +  P+T
Sbjct: 59  ALDPDSTTSDDLVTSVKRGVWAMIAVFLAYSLLQAPST 96


>At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3)
           identical to non-phototropic hypocotyl 3 [Arabidopsis
           thaliana] gi|6224712|gb|AAF05914, PMID:10542152
          Length = 746

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = -2

Query: 566 RWKKSC-STFHC---RTGNPIPVP--WWLKDSSV 483
           RW +S  S+F+C   R  N  PVP  WW +D S+
Sbjct: 225 RWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSI 258


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 96  PMSHSFPWWLIVNGPPESPRQIPTPPTPLV 185
           PM HS     +   PP  P   P PPTP+V
Sbjct: 697 PMQHS----TVTKVPPPPPPAPPAPPTPIV 722


>At4g01630.1 68417.m00212 expansin, putative (EXP17) similar to
           alpha-expansin precursor GI:4027891 from [Nicotiana
           tabacum]; alpha-expansin gene family, PMID:11641069
          Length = 255

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 479 GRRLNP*ATMEQEWGSQYDSETYCTISSI 565
           G + N   TM + WG+ Y S TY    S+
Sbjct: 193 GSKSNKWETMSRNWGANYQSNTYLNGQSL 221


>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +3

Query: 102 SHSFPWWLIVNGPPESPRQIPTPPTPLVQMLESKTTLP**PRQVSKDIVCRKTFLAIVFV 281
           +H  P  L V GPP+ P+Q    P P +Q +         P   S+ I   + +  ++  
Sbjct: 147 NHPVP--LAVQGPPQQPQQQQPQPQPQLQTIY--------PTLQSQSIPSSQQYGLVLTR 196

Query: 282 VGFITSEYLPYP 317
             F+T  YL  P
Sbjct: 197 PSFLTGSYLQSP 208


>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
           protein
          Length = 776

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 620 RRIDPYPCQHLNCSSLLVRWKKSCSTFH--CRTGNPI 516
           +R DP  CQ +  S+      + CS  H  C++G+PI
Sbjct: 662 KRHDPNACQRIKNSNEARNCLQGCSLLHVACQSGDPI 698


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,550,328
Number of Sequences: 28952
Number of extensions: 404023
Number of successful extensions: 1259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)