Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i11f
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    29   0.57 
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    27   1.7  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   2.3  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.3  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   9.3  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   9.3  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   9.3  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.3  

>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
 Frame = +3

Query: 129 RLSKRNNTKYLC---SASLGELLRQSITIHI 212
           R +KR+N +YLC   SAS+G +LR ++ I++
Sbjct: 300 RFNKRDNEEYLCTHPSASVGGILRGNLHINL 330


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 642 DIVCRKTFLAIVFVVGFITSEYLP 571
           D  C KT L  VF +G+  +EY+P
Sbjct: 16  DGACGKTSLLSVFTLGYFPTEYVP 39


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 489 WLNIIRRGKYSIAMSFANVLKSY 421
           WL +I   +Y +A  FAN LK Y
Sbjct: 465 WLLVISVDQYHLATKFANYLKEY 487


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 266 GSILTP-ASILTAAHCWFDGRNRAVRFTVVLGTPF 367
           G ILTP  S +T    W    N+  RF++V+G PF
Sbjct: 429 GIILTPEVSAVTLCLFW----NKMTRFSLVVGAPF 459


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 142 RLLNLCSRFNANFFEPSYKF--FVGATFTTCVGHKAQNEK 29
           RL NLCS F +   + + +F      T++TC  H+ +NE+
Sbjct: 316 RLENLCS-FQSTILKHALQFPNCRHVTYSTCSVHRLENEQ 354


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 406 NGRRLNP*ATMEQEWGSQYDSETYCTISSIEPAMSCS 296
           NG  L+  +  + + G  Y S ++  +S I P   CS
Sbjct: 178 NGELLSTSSARQNQTGLSYPSVSFSLLSQITPHQRCS 214


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 639 IVCRKTFLAIVFVVGFITSEYLP 571
           +VC   +L +V+++G+I  E  P
Sbjct: 332 VVCFTLYLTVVYIIGYIDFEGYP 354


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 176 GGAIAPINYHPYLAGLLIDINELQSPAACGG 268
           GGAI  +  +      L++   + SP+ACGG
Sbjct: 491 GGAITSVPPYSLQNSQLMNGTSMSSPSACGG 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,382
Number of Sequences: 5004
Number of extensions: 62100
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)