Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i11f
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 31 1.0
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 31 1.0
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623... 30 1.4
09_02_0406 - 8629287-8629304,8629384-8629865,8629977-8630291,863... 29 4.1
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485 28 5.5
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 28 5.5
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 28 7.2
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 27 9.6
07_01_0599 - 4457770-4458449,4458575-4458944 27 9.6
06_01_1112 - 9157776-9158149,9158248-9161158 27 9.6
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095... 27 9.6
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 176 GGAIAPINYHPYLAGLLIDINELQSPAACGGSIL 277
GGA+AP+ + +L++ + SP+ACGG L
Sbjct: 482 GGAVAPVPTWTLQSRMLMNGTSMSSPSACGGVAL 515
>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
Length = 778
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Frame = +1
Query: 271 DPYPCQHLNCSSLLVRWKKSCSTFHCRTGN-----PIPVPWWLKDSSV 399
+P L +W C H R+ N P P+PWW + SSV
Sbjct: 555 EPQTSHKAELMELRRKWGILCQRVHSRSHNDQASVPSPMPWWCRPSSV 602
>08_01_0705 +
6231220-6231390,6231900-6231954,6232043-6232194,
6232252-6232335,6232614-6232797,6232885-6232988,
6233109-6233183,6233366-6233405,6233495-6233577,
6233687-6233764,6233868-6234011,6234093-6234160,
6234831-6234945,6235045-6235201,6235311-6235408
Length = 535
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 74 ANEEFVGWLEKVGIKTAAKIKQAEQHQ----IFMQRIVGGAIAPINYHPYLAGLLIDINE 241
A+ F+G+ G+ AAK+ + Q +F+QR GG ++ + Y A + +IN+
Sbjct: 320 ADPTFLGYFIDKGVSAAAKVVRKAYPQEKVGVFVQRGRGGPLSVVEYSEMDAAMTTEINQ 379
>09_02_0406 -
8629287-8629304,8629384-8629865,8629977-8630291,
8630381-8630576
Length = 336
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 93 DGSKKLALKRLQRLSKRNNTKYLCSASLGELLRQSITIHIWQV 221
DG+ K L L+++++R +T+ LC LLR S H+W V
Sbjct: 4 DGTLKSRLILLRKVARRLSTRDLCEEFC--LLRISPLAHVWDV 44
>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
Length = 483
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 326 FFHRTSNELQLRCWQG*GSIRRTRPVI 246
FF RT NEL + QG SIR T V+
Sbjct: 169 FFWRTENELDIGSGQGTSSIRSTSSVL 195
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 177 PTMRCINIWCCSACLIFAAVLM 112
P +R WC + CL+F A +M
Sbjct: 600 PVLRYFKFWCSTPCLVFEASVM 621
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 133 NLCSRFNANFFEPSYKFFVGATFTTCVGHKAQNEKH 26
N SRF NFF+P++ + TF + V + E+H
Sbjct: 9 NKTSRFRINFFDPAFVLLL--TFISPVNSCTEQERH 42
>12_02_0318 -
17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 557 RPTCLPCQCLEANQWLMELAVPHG 486
+P C + +E ++W++ LA PHG
Sbjct: 313 KPECRDKKRMEVDKWVITLAFPHG 336
>07_01_0599 - 4457770-4458449,4458575-4458944
Length = 349
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 563 LQRPTCLPCQCLEANQWLMELAVPHG*ILYDGVST 459
L R C+P LE QW M L P IL+D T
Sbjct: 192 LIRTGCMPSFDLETEQWSMTLQGPTKTILHDANGT 226
>06_01_1112 - 9157776-9158149,9158248-9161158
Length = 1094
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +2
Query: 131 IKQAEQHQIFMQRIVGGAIAPINYHPYLAGLLIDINELQSPAACGGSILTPASILTAAH 307
IKQ I+M R VG I + L L + +NE S L+ IL +H
Sbjct: 611 IKQINYMDIYMNRFVGSLPDSIGHLQMLGYLNLSVNEFHDSIPDSFSNLSGLQILDISH 669
>05_06_0186 -
26207298-26208548,26208743-26208853,26209286-26209507,
26209623-26209658
Length = 539
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 247 ITGRVRRIDPYPCQHLNCSSLLVRWKKSCSTFHC 348
+ G V +ID C L C S+ + K+ +F C
Sbjct: 80 LAGLVSQIDELVCAALECQSVSAKGKQEIESFSC 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,450,509
Number of Sequences: 37544
Number of extensions: 444698
Number of successful extensions: 1063
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -