Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i11f
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3) ...    32   0.28 
At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)...    29   3.5  
At2g25010.1 68415.m02990 expressed protein                             29   3.5  
At2g22810.1 68415.m02707 1-aminocyclopropane-1-carboxylate synth...    28   6.1  
At1g15110.1 68414.m01804 phosphatidyl serine synthase family pro...    28   6.1  
At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3) iden...    27   8.0  
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea...    27   8.0  
At4g01630.1 68417.m00212 expansin, putative (EXP17) similar to a...    27   8.0  
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing...    27   8.0  

>At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3)
           identical to papain-like cysteine peptidase XBCP3
           GI:14600257 from [Arabidopsis thaliana]; contains Pfam
           profiles PF00112: Papain family cysteine protease and
           PF00396: Granulin
          Length = 437

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 8   STMRSLVFFILCFVTYTSSESSANEEFVGWLEKVGIKTAAKIKQAEQHQIF 160
           S+  SL FF L  V+ +SS    +E F  W +K G    ++ ++ ++ QIF
Sbjct: 6   SSFISLTFFFLLLVSSSSSSDDISELFDDWCQKHGKTYGSEEERQQRIQIF 56


>At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)
           nearly identical to SH3 domain-containing protein 3
           [Arabidopsis thaliana] GI:16974680; contains Pfam
           profile PF00018: SH3 domain
          Length = 351

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 137 QAEQHQIFMQRIVGGAIAPINYHPYLAGLLIDI 235
           +++QH++  QR+V       NYH  +A +L DI
Sbjct: 222 ESQQHRLTFQRLVAMVEGEKNYHLRIAAILSDI 254


>At2g25010.1 68415.m02990 expressed protein
          Length = 509

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 253 GRVRRIDPYPCQHLNCSSLLVRWKKSCSTFHCRTG 357
           G  R+I P    +   S+L+ RW++  +TFH   G
Sbjct: 61  GYFRKIGPMSLNNSLISALVERWRRETNTFHLPLG 95


>At2g22810.1 68415.m02707 1-aminocyclopropane-1-carboxylate synthase
           4 /  ACC synthase 4  (ACS4) identical to gi:940370
           [GB:U23481]
          Length = 474

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 84  NL*DGSKKLALKRLQRLSKRNNTKYLCSASLGELLRQS 197
           N+ D + KLALKRL+ L    N+   C  S  E L  S
Sbjct: 412 NMIDETLKLALKRLKMLVDDENSSRRCQKSKSERLNGS 449


>At1g15110.1 68414.m01804 phosphatidyl serine synthase family
           protein contains Pfam profile: PF03034 phosphatidyl
           serine synthase
          Length = 425

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 491 AVQPIPLATDSLLSTDKAGMWAVAAGYGRYSDVINPTT 604
           A+ P    +D L+++ K G+WA+ A +  YS +  P+T
Sbjct: 59  ALDPDSTTSDDLVTSVKRGVWAMIAVFLAYSLLQAPST 96


>At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3)
           identical to non-phototropic hypocotyl 3 [Arabidopsis
           thaliana] gi|6224712|gb|AAF05914, PMID:10542152
          Length = 746

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +1

Query: 316 RWKKSC-STFHC---RTGNPIPVP--WWLKDSSV 399
           RW +S  S+F+C   R  N  PVP  WW +D S+
Sbjct: 225 RWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSI 258


>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
           family protein similar to TBP-associated factor
           (GI:1732075) [Homo sapiens] and to 100 kDa subunit of
           Pol II transcription factor (GI:1491718) {Homo sapiens];
           contains Pfam PF00400: WD domain, G-beta repeat (6
           copies)|8689032|gb|AV528749.1|AV528749
          Length = 666

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 77  NEEFVGWLEKVGIKTAAKIKQAEQHQIFMQRIVGGAIAPINYH 205
           NE  VG+L+K G  +AAK  ++  H    Q   G +   ++YH
Sbjct: 7   NEFVVGYLKKKGFSSAAKDLESYHH----QNNNGSSFTSVDYH 45


>At4g01630.1 68417.m00212 expansin, putative (EXP17) similar to
           alpha-expansin precursor GI:4027891 from [Nicotiana
           tabacum]; alpha-expansin gene family, PMID:11641069
          Length = 255

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 403 GRRLNP*ATMEQEWGSQYDSETYCTISSI 317
           G + N   TM + WG+ Y S TY    S+
Sbjct: 193 GSKSNKWETMSRNWGANYQSNTYLNGQSL 221


>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
           protein
          Length = 776

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 262 RRIDPYPCQHLNCSSLLVRWKKSCSTFH--CRTGNPI 366
           +R DP  CQ +  S+      + CS  H  C++G+PI
Sbjct: 662 KRHDPNACQRIKNSNEARNCLQGCSLLHVACQSGDPI 698


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,214,396
Number of Sequences: 28952
Number of extensions: 336716
Number of successful extensions: 805
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)