Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i09r
(757 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 198 3e-51
Z81513-5|CAB04175.1| 332|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical p... 29 4.7
Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical pr... 29 4.7
U41555-9|AAB37034.1| 646|Caenorhabditis elegans Hypothetical pr... 29 4.7
U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical pr... 29 4.7
D30651-1|BAA21637.1| 646|Caenorhabditis elegans flavoprotein su... 29 4.7
AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase... 29 4.7
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 198 bits (483), Expect = 3e-51
Identities = 95/146 (65%), Positives = 118/146 (80%), Gaps = 1/146 (0%)
Frame = -2
Query: 756 ADXILIDR-NILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNYHLLESVQ 580
AD IL+ R + L+IPD+Y+N+GGVTVS+FEWLKNLNHVSYGRLTFKY+ E+N LL SVQ
Sbjct: 393 ADRILLARGDCLIIPDMYVNSGGVTVSYFEWLKNLNHVSYGRLTFKYDEEANKMLLASVQ 452
Query: 579 ESLERRFGRVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMRFNLG 400
ESL + VG PV P+ +F +I+GASEKDIVHSGL+YTM+RS AI++TA ++NLG
Sbjct: 453 ESLSKA---VGKDCPVEPNAAFAAKIAGASEKDIVHSGLEYTMQRSGEAIIRTAHKYNLG 509
Query: 399 LDLRTAAYANSIEKIFTTYADAGLAF 322
LD+RTAAYANSIEK++ TY AG F
Sbjct: 510 LDIRTAAYANSIEKVYNTYRTAGFTF 535
>Z81513-5|CAB04175.1| 332|Caenorhabditis elegans Hypothetical
protein F26D2.4 protein.
Length = 332
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 207 TVRSRHEIKPLG*FYSYCLHFIHFDLIPVHVNFTYKRHCNHSIFL-CVEIMAFYLNLSET 31
T RH FY+Y LHF+ IP+H+ TY I + V++ L+L+
Sbjct: 2 TCTYRHSFLESDEFYAYSLHFLSIFQIPLHIFGTYIVLFKTPIHMERVKLSMLVLHLTFA 61
Query: 30 LLNIYVKI 7
L++Y+ I
Sbjct: 62 WLDVYLTI 69
>Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical
protein F31B12.1a protein.
Length = 1898
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 192 VVISLYCKMKEINIGLNLRSTLEFLRKYYTDNTLKLVFSK*IIRKLDRHRHTW*ISFRWS 371
V++ C ++N G ++ L RK D T K ++ R L ++ + W RW
Sbjct: 1786 VLVEETCDDPKLNQGQSMLQALSLARKRSNDLTPKYPNNRTTSRVLGQNENVWKAQSRWK 1845
Query: 372 SHTR 383
S R
Sbjct: 1846 SMGR 1849
>Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical protein
F31B12.1a protein.
Length = 1898
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 192 VVISLYCKMKEINIGLNLRSTLEFLRKYYTDNTLKLVFSK*IIRKLDRHRHTW*ISFRWS 371
V++ C ++N G ++ L RK D T K ++ R L ++ + W RW
Sbjct: 1786 VLVEETCDDPKLNQGQSMLQALSLARKRSNDLTPKYPNNRTTSRVLGQNENVWKAQSRWK 1845
Query: 372 SHTR 383
S R
Sbjct: 1846 SMGR 1849
>U41555-9|AAB37034.1| 646|Caenorhabditis elegans Hypothetical
protein C03G5.1 protein.
Length = 646
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 528 PSESFQKRISGASEKDIVHSGLDYTME 448
P+E Q+R+ G SE ++ +G+D T E
Sbjct: 353 PAEQLQQRLPGISETAMIFAGVDVTKE 379
>U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical
protein F53A9.7 protein.
Length = 85
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 457 HHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHH 347
HHG + HHE+SH + + E H + HH
Sbjct: 42 HHGHVDTHHHEESHHGEHHGGHHGVQHYESHHESHHH 78
>D30651-1|BAA21637.1| 646|Caenorhabditis elegans flavoprotein
subunit of complex II protein.
Length = 646
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 528 PSESFQKRISGASEKDIVHSGLDYTME 448
P+E Q+R+ G SE ++ +G+D T E
Sbjct: 353 PAEQLQQRLPGISETAMIFAGVDVTKE 379
>AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase C
PLC210 protein.
Length = 1898
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 192 VVISLYCKMKEINIGLNLRSTLEFLRKYYTDNTLKLVFSK*IIRKLDRHRHTW*ISFRWS 371
V++ C ++N G ++ L RK D T K ++ R L ++ + W RW
Sbjct: 1786 VLVEETCDDPKLNQGQSMLQALSLARKRSNDLTPKYPNNRTTSRVLGQNENVWKAQSRWK 1845
Query: 372 SHTR 383
S R
Sbjct: 1846 SMGR 1849
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,562,345
Number of Sequences: 27780
Number of extensions: 358053
Number of successful extensions: 987
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -