Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i09r
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi...    53   2e-07
At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi...    51   7e-07
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil...    51   7e-07
At5g20370.1 68418.m02423 serine-rich protein-related contains so...    30   1.9  
At4g28080.1 68417.m04027 expressed protein                             29   3.3  
At1g02120.1 68414.m00138 GRAM domain-containing protein-related ...    29   4.4  
At2g32800.1 68415.m04015 protein kinase family protein contains ...    28   7.7  

>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
           to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
           thaliana] SWISS-PROT:Q38946
          Length = 411

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 19/34 (55%), Positives = 29/34 (85%)
 Frame = -2

Query: 756 ADXILIDRNILVIPDLYINAGGVTVSFFEWLKNL 655
           AD IL  + ++++PD+Y NAGGVTVS+FEW++N+
Sbjct: 319 ADEILSKKGVIILPDIYANAGGVTVSYFEWVQNI 352


>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 18/34 (52%), Positives = 29/34 (85%)
 Frame = -2

Query: 756 ADXILIDRNILVIPDLYINAGGVTVSFFEWLKNL 655
           AD IL  + ++++PD+Y N+GGVTVS+FEW++N+
Sbjct: 319 ADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 352


>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 18/34 (52%), Positives = 29/34 (85%)
 Frame = -2

Query: 756 ADXILIDRNILVIPDLYINAGGVTVSFFEWLKNL 655
           AD IL  + ++++PD+Y N+GGVTVS+FEW++N+
Sbjct: 319 ADEILKKKGVMILPDIYANSGGVTVSYFEWVQNI 352


>At5g20370.1 68418.m02423 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 175

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -2

Query: 519 SFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMRFNLGLDLRTAAYANSIEKIFTTYA 340
           SF +R+     K +  S    T++R+ R      +R N+GL+LR  A  NS+ KI +  A
Sbjct: 85  SFHRRLEHEKSKTLASS----TVKRNNRG--DNTIRVNVGLNLRKLALMNSLAKIGSVEA 138

Query: 339 D 337
           +
Sbjct: 139 E 139


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +3

Query: 192 VVISLYCKMKEINIGLNLRST---LEFLRKYYTDNTL 293
           V  + Y ++KE   G +L+S    +E  RKYYTD  L
Sbjct: 502 VTETAYQRLKESETGFHLKSPKELIEMARKYYTDTAL 538


>At1g02120.1 68414.m00138 GRAM domain-containing protein-related
           contains low similarity to PF02893: GRAM domain
          Length = 556

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 520 VLPEENLRRLREGHRALRTRLHHGE 446
           ++ E+ L+R+R+ H AL+ + HH E
Sbjct: 524 MMVEDRLQRMRQDHAALKAQFHHLE 548


>At2g32800.1 68415.m04015 protein kinase family protein contains
           dual protein kinase domains, Pfam:PF00069
          Length = 851

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 618 ERESNYHLLESVQESLERRFG--RVGGRIPVTPSESFQKRISGASEKDIVHSGL 463
           E +S+Y  + S +    R     R+GG I   P ESF+K+    ++ D+   G+
Sbjct: 281 EHDSSYDSVSSFRNHQFRVADSTRIGGTIGYLPPESFRKKTVATAKTDVFSFGV 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,539,092
Number of Sequences: 28952
Number of extensions: 326842
Number of successful extensions: 742
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)