Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i09f
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 34 0.014
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 26 3.7
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 4.9
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 26 4.9
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 8.6
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 25 8.6
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 25 8.6
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 8.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.6
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 34.3 bits (75), Expect = 0.014
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 449 ILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
+L ++ + +LE + D G+ + GYR Q ++ P KGG+RF V
Sbjct: 35 VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSV 86
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 470 CDHILEIQFPLRR 508
CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 3.7
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -3
Query: 545 RDSLISFRNRQNRASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQLDR 366
R+SL +N + AS+ + Q+ +L + S + + + NL+ LRQ
Sbjct: 45 RESLGILQNVTHEASQPFQPQDHPSEAAALLMFHSSSIYNKRCLMAYHNLRLQRLRQYCW 104
Query: 365 LGGKNILPCGRTS-DSHL*EYL*AYLE 288
GGK + C TS ++ +YL Y E
Sbjct: 105 SGGKRMESCLDTSLSTYERDYLTRYSE 131
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 4.9
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +2
Query: 206 QNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVED 385
QN+++N R+I ++ R Y IP +D A H E F+ R Q
Sbjct: 667 QNKSMNERLRVIGKRIDHLERAYRREAIPLWEEDAKQQAE----HDREIFYEREKQ---R 719
Query: 386 KLVEDLKSRTPIEEKK 433
K V++ K I++KK
Sbjct: 720 KEVQERKHEQAIKDKK 735
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -3
Query: 548 VRDSLISFRNRQNRASEEIES-QECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQ 375
++D + + + + + EIES + + + EYR LS + + VSL S + Q R+
Sbjct: 287 IKDYVSHLQTKSTKKASEIESIADMKQFLEAYPEYRRLSGNVSKHVSLVSEISQVVQRE 345
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 286 LMTSVCAAADIHSSWYDSEHCIEGFIL 206
LM V +A DIH+S + +HC + ++
Sbjct: 762 LMDDVFSALDIHTSNWIYKHCFQSSLM 788
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 313 YKCESEVLPHGRIFFPPSLSSCRRQAC 393
Y CE ++ PP ++CR++ C
Sbjct: 89 YNCEKQICRKCYARLPPRATNCRKKKC 115
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 313 YKCESEVLPHGRIFFPPSLSSCRRQAC 393
Y CE ++ PP ++CR++ C
Sbjct: 89 YNCEKQICRKCYARLPPRATNCRKKKC 115
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 572 LESCVWNVVRDSLISFRNRQN-RASEEIE 489
+ C+WN++R NR+N RA+ E++
Sbjct: 612 MRRCMWNILRVEHEEIYNRENLRAARELK 640
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +2
Query: 341 MVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKV 442
+++ ++H AC+V+ D+LV + + E +K +
Sbjct: 2744 LIKVWYHEACRVLLDRLVSQKECSWGMTELQKVI 2777
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,932
Number of Sequences: 5004
Number of extensions: 54556
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -