Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i09f
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093...    39   0.003
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595...    39   0.003
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259...    38   0.006
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168...    33   0.18 
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454           30   1.3  
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369...    28   6.7  
07_03_1079 - 23798005-23798760                                         27   8.9  

>04_04_0678 +
           27207340-27207447,27207555-27207668,27209111-27209332,
           27209407-27209481,27209569-27209685,27210145-27210395,
           27210686-27210761,27210862-27210948,27211037-27211222
          Length = 411

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRD 613
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  D
Sbjct: 35  IKVECTIPKDDGTLASFIGFRVQHDNARGPMKGGIRYHPEVDPD 78


>02_05_0144 +
           26258841-26258948,26259099-26259212,26259335-26259556,
           26259660-26259734,26259827-26259943,26260046-26260296,
           26260833-26260908,26261045-26261131,26261216-26261401
          Length = 411

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRD 613
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  D
Sbjct: 35  IKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPD 78


>03_06_0282 -
           32824950-32825135,32825247-32825505,32825651-32825901,
           32826309-32826425,32826613-32826687,32826788-32827009,
           32827396-32827509,32827694-32827801
          Length = 443

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRD 613
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  D
Sbjct: 35  IKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPD 78


>01_05_0337 +
           21115388-21115961,21116471-21116597,21116683-21116884,
           21117460-21117546,21117622-21117681,21117800-21117886,
           21118451-21118522,21118675-21118730,21118812-21118897,
           21119427-21119517,21119593-21119750,21119827-21119918,
           21120110-21120190,21120282-21120479
          Length = 656

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 395 EDLKSRTPIEEKKKKVAGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTP 571
           E + S  P+  K  +   IL +L+EP +     + P   D G+  +  G+R Q S    P
Sbjct: 220 EVVHSLEPVLVKNSQHVQILERLLEP-ERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGP 278

Query: 572 TKGGIRFSTDVT 607
            +GG+RF   +T
Sbjct: 279 CRGGLRFHPSMT 290


>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
          Length = 748

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/88 (22%), Positives = 37/88 (42%)
 Frame = +2

Query: 338 HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSG 517
           H     F +   V ED  + +   +  +E  K+KV     + E  + ++ ++   +   G
Sbjct: 642 HSGRAMFDKEIAVEEDIFILEEIGKLAMECLKEKVEERPDMKEVAERLVMLRRARKHGQG 701

Query: 518 DYEMILGYRAQHSTHRTPTKGGIRFSTD 601
            Y +   +  + S   TPT  G  FST+
Sbjct: 702 SYNLSPRHHEEISIETTPTSFGADFSTN 729


>02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,
            3697214-3698062,3698193-3698337,3698426-3698677,
            3698780-3699089,3699415-3699524
          Length = 962

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 338  HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDS 514
            H    F   AC ++  KLV+ L     +EE+      +L L+      LE  +PL++D+
Sbjct: 882  HGCNTFQPLACSILATKLVDSLSYDRVLEERVLASLSLLNLVRH-PECLEKLYPLKKDT 939


>07_03_1079 - 23798005-23798760
          Length = 251

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 452 EYRLLSFSSLQWVSLTSNLQQACLRQLDRLGGKNILPCGRT 330
           E RLL+ +SL+  +  +   QA    ++R G +N+  CG +
Sbjct: 112 ELRLLARNSLRGSARLAGALQALRATIERFGSENVCLCGHS 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,086,529
Number of Sequences: 37544
Number of extensions: 346618
Number of successful extensions: 810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)