Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i09f
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 96 2e-20
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08) 36 0.026
SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4) 35 0.045
SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25) 34 0.10
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 32 0.32
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 32 0.32
SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26) 29 2.2
SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_58319| Best HMM Match : Herpes_BFRF1 (HMM E-Value=3.6) 27 9.1
SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0) 27 9.1
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
Length = 520
Score = 95.9 bits (228), Expect = 2e-20
Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Frame = +2
Query: 308 IPTSANPKFFHMVEYFFHRACQVVEDKLVE--DLKSRTP--IEEKKKKVAGILKLMEPCD 475
+ + P F M FF +A VE +L+ D + P E+KK ++ GIL +M+PC
Sbjct: 38 VESDTEPSFTEMCAGFFDQARTYVEHRLLTRPDPPGKIPEKFEDKKHRIKGILDVMKPCQ 97
Query: 476 HILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRD 613
+L + FP++ D+G+Y+++ GYRAQHS HR+P KGGIR+S DV D
Sbjct: 98 DVLSVVFPIKLDNGEYKLVQGYRAQHSHHRSPCKGGIRYSEDVDID 143
>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 997
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 455 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
+++EP + +L + P D G+ ++ GYR + ++ P KGG+RF V
Sbjct: 379 RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSV 427
>SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08)
Length = 131
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 455 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
+++EP + +L + P D G+ ++ GYR + ++ P KGG+RF V
Sbjct: 71 RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSV 119
>SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)
Length = 582
Score = 35.1 bits (77), Expect = 0.045
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +2
Query: 269 TYASHEIPDKLKDIPTSANPKFFHMVEYFFHR--ACQVVEDKLVEDLKSRTPIEEKKKKV 442
TY+ E+ D L++ +S FH+ + HR +++ + V+D K +TP E KK
Sbjct: 334 TYSQSELMD-LRNNSSSLTD--FHI--FCLHRWLPANLLKPEAVKDAKKQTPDLEFKKWT 388
Query: 443 AGILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRT 568
GIL I E+ PL+R+ + Y+AQ H T
Sbjct: 389 KGILDHAGTVSAISEVIEPLKRNLTELFKAQDYQAQPLDHLT 430
>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
Length = 312
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 200 SVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSA 322
+V +A+NT ++ +N CCRT + I K +PT A
Sbjct: 251 TVPTKAINTCKTVLTKAINTCCRTVPTKAINTCCKTVPTKA 291
>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
Length = 448
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 443 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
A IL +++EP + ++ + P R DS + + G+R + ++ P KGG+RF V
Sbjct: 47 ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTV 100
>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
Length = 486
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 443 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
A IL +++EP + ++ + P R DS + + G+R + ++ P KGG+RF V
Sbjct: 85 ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTV 138
>SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -1
Query: 370 TGSVEKIFYHVEELRIRTCRNIFELIWNLMTSVCAAADIHSSWYDSEHCIEGF 212
TG+V +YH +L I + NI W VC D ++Y S++ I+ F
Sbjct: 203 TGAVYTDYYHDSDLTIGSVLNI----WGRKFQVCDCDDFTKAYYKSKYGIDSF 251
>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 704
Score = 30.7 bits (66), Expect = 0.97
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +1
Query: 343 GRIFFPPSLSSCRRQAC*RFEVKDTH*RE-EKESSRYSKTYGTMRSHS*DSISSEARFWR 519
GR F P S++ RQ R+E RE E E K + + +F R
Sbjct: 214 GRDFGPHSINVHERQCAKRWEANKKQQREIEDEKKAREKKREPWKEPVFPPLRRHEQFTR 273
Query: 520 LRNDIRLSRTTFHTQDSNQRRYSI 591
+DIR R + H + + YS+
Sbjct: 274 SLHDIRAKRDSLHLEFEKELLYSL 297
>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 301 QRYSYKCESEVLPHGRIFFPPSLSSC 378
QR YK SE HGR FP SL C
Sbjct: 163 QRVGYKVSSEAHIHGRQSFPLSLDHC 188
>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
Length = 889
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 608 WLRPLRIEYLLWLESCVWNVVRDSLISFRN--RQNRASEEIESQ 483
WL L I LLW CV+ ++RDS ++ S EI+S+
Sbjct: 422 WLCLLTISLLLWQPLCVYTLLRDSHTMLKSPLASQLGSREIDSR 465
>SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +2
Query: 191 LKNSVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRAC 370
+K N+ T+ I+P + RTY DK+ +IP+ F + E F
Sbjct: 194 MKRFGDNDLYTTLGYILPTHLLSMARTYEKRRKMDKVTEIPS-----FLALDELEFFEPF 248
Query: 371 QVV---EDKLVEDLKS 409
V+ +D V DLKS
Sbjct: 249 PVIDGNDDVFVHDLKS 264
>SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 158 DAAWWLIMLSTTIGLGIGSPYT 93
DA WW ++ TT+G G P T
Sbjct: 462 DAFWWAVVTMTTVGYGDMRPIT 483
>SB_58319| Best HMM Match : Herpes_BFRF1 (HMM E-Value=3.6)
Length = 316
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 326 PKFFHMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPC 472
P FF E + + V+ ++ V D S+ P+EEK ++ K E C
Sbjct: 90 PSFFEEREGYGPKVIDVIAER-VNDACSKKPLEEKLNELQNKYKTPENC 137
>SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 486
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 158 DAAWWLIMLSTTIGLGIGSPYT 93
DA WW ++ TT+G G P T
Sbjct: 368 DAFWWAVVTMTTVGYGDMYPVT 389
>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2484
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 149 WWLIMLSTTIGLGIGSPYTY 90
WW I+ TT+G G SP T+
Sbjct: 1976 WWAIITMTTVGYGDVSPKTW 1995
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,487,018
Number of Sequences: 59808
Number of extensions: 393767
Number of successful extensions: 864
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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