Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i08r
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70034-4|CAA93855.1|  103|Caenorhabditis elegans Hypothetical pr...    61   3e-10
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>Z70034-4|CAA93855.1|  103|Caenorhabditis elegans Hypothetical
           protein C18E9.4 protein.
          Length = 103

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
 Frame = -2

Query: 396 MGGHGHGPPYTVPHYSQFT-VKGIPQLDELEKALAVKGLKDPWIRNEAWRY---HPGFGT 229
           MGG GH  P+ +P+YS ++  +  PQL + EK LA  GLKDPWIRN  + Y   +P    
Sbjct: 1   MGG-GHHEPFKIPNYSIYSNFRDFPQLAQHEKRLAQIGLKDPWIRNYVYLYDRKYPHVVG 59

Query: 228 RWQRARKFFFRGFPIGLGLTVITVALDK 145
           +W   +K    G+  G+  T   + +++
Sbjct: 60  QWAHFKKLILPGWKAGVAFTAALIFVEE 87


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical protein
            M18.5 protein.
          Length = 1134

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 287  DLKIHGSEMRLGDITLDLALAGREPENSSLEDFPLDWDSQ 168
            DLK+   E+ + D+   ++L        + E+   DW+SQ
Sbjct: 908  DLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQ 947


>Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical
           protein F59B2.5 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 137 EGVNMGMVTGTRESIDFVVNCLHHCS*NKIELL 39
           +GV   +  G +E ID + NC+   + NK E L
Sbjct: 137 QGVGPALDHGKKEKIDLLTNCIGWATSNKREFL 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,145,586
Number of Sequences: 27780
Number of extensions: 235484
Number of successful extensions: 644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)