Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i08r
(472 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61390.1 68418.m07702 exonuclease family protein contains exo... 29 2.1
At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1) a... 29 2.1
At5g26140.1 68418.m03109 lysine decarboxylase family protein con... 27 8.5
At5g25110.1 68418.m02975 CBL-interacting protein kinase 25 (CIPK... 27 8.5
At5g02810.1 68418.m00223 pseudo-response regulator 7 (APRR7) ide... 27 8.5
At1g75530.1 68414.m08778 forkhead-associated domain-containing p... 27 8.5
At1g55960.1 68414.m06418 expressed protein weak similarity to SP... 27 8.5
At1g23890.2 68414.m03013 NHL repeat-containing protein contains ... 27 8.5
At1g23890.1 68414.m03014 NHL repeat-containing protein contains ... 27 8.5
>At5g61390.1 68418.m07702 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 487
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -2
Query: 471 IPLSIFKRKSSSLI-IVCEVNGNLLRMGGHGHGPPYTVPHYSQFTVKGIPQLDELEKALA 295
IP+ F ++ I I E+NG++ R H ++ +Q + P+ +E+E L
Sbjct: 396 IPMKGFLNCPTARIHIPTELNGDIDRYAAEIHQKEFSGATATQKLISSNPKAEEIESLLN 455
Query: 294 VKGLKDPWIRNEAWRYHPGFGTR 226
+ + D ++ E + Y G R
Sbjct: 456 PRTVLDAFLSLEPYDYQQRAGIR 478
>At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1)
annotation temporarily based on supporting cDNA
gi|18483289|gb|AF466153.1|; supporting cDNA are SWITCH1
splice variant S and SWITCH1 splice variant L (SWI1)
GI:16033413 and GI:16033410
Length = 639
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 133 PSHKFIQSHCDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISD 270
PS ++SH DY N K G LP +S V++ L D
Sbjct: 77 PSMFSLRSHFDYSRMNRNKPMKKRSGGGLLPVFDESHVMASELAGD 122
>At5g26140.1 68418.m03109 lysine decarboxylase family protein
contains Pfam profile PF03641: decarboxylase family
protein
Length = 143
Score = 26.6 bits (56), Expect = 8.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 118 MPMFTPSHKFIQSH 159
M ++TPSHK+I SH
Sbjct: 110 MELYTPSHKYIASH 123
>At5g25110.1 68418.m02975 CBL-interacting protein kinase 25 (CIPK25)
identical to CBL-interacting protein kinase 25
[Arabidopsis thaliana] gi|17646697|gb|AAL41008
Length = 488
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 196 SKEEFSGSLPASAKSRVISPSLISDPWIFKSFNS*GLFKLIQL 324
SK S L R+ P+++ PW K+ NS FK+ +L
Sbjct: 270 SKRLISKLLVVDPNKRISIPAIMRTPWFRKNINSPIEFKIDEL 312
>At5g02810.1 68418.m00223 pseudo-response regulator 7 (APRR7)
identical to pseudo-response regulator 7 GI:10281004
from [Arabidopsis thaliana]
Length = 727
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +1
Query: 172 ESQSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIFKSFNS*GLFKLIQLWDTFDSKLG 351
+S + SS E +GS+ +A S W K+ + + + LWD DS
Sbjct: 226 KSDQDSGSSDENENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDSPRAVSLWDRVDSTCA 285
Query: 352 VVRH 363
V H
Sbjct: 286 QVVH 289
>At1g75530.1 68414.m08778 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 555
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 34 SISNSILFQLQ*CKQFTTKSMLSLVPVTMPMFT 132
S+S+S+ F+LQ QF +S+ VPV +T
Sbjct: 57 SLSSSVGFELQYGAQFVPQSLFDSVPVRTHYYT 89
>At1g55960.1 68414.m06418 expressed protein weak similarity to
SP|P53808 Phosphatidylcholine transfer protein (PC-TP)
{Mus musculus}
Length = 403
Score = 26.6 bits (56), Expect = 8.5
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 70 CKQFTTKSMLSLVPVTMPMFTPSHKFIQSHCDYCESQSNGKSSKEEFSGSLPASAKSRVI 249
C +TT L L+ + F+ +F S S S+ S E S+PA+++SR+
Sbjct: 24 CYLWTTAISLLLILLLHIFFSTKFRFFTSAPSSSSSSSSSSSPSTE---SVPANSQSRI- 79
Query: 250 SPSLISD 270
L+SD
Sbjct: 80 -SKLVSD 85
>At1g23890.2 68414.m03013 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 400
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 450 RKSSSLIIVCEVNGNLLRMGGHGHGPPYTVPHYSQFTVKGIPQ 322
RK SS V + G + + GH GP S F + +PQ
Sbjct: 125 RKISSSGSVTTIAGGISKAFGHRDGPAQNATFSSDFEITFVPQ 167
>At1g23890.1 68414.m03014 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 261
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 450 RKSSSLIIVCEVNGNLLRMGGHGHGPPYTVPHYSQFTVKGIPQ 322
RK SS V + G + + GH GP S F + +PQ
Sbjct: 125 RKISSSGSVTTIAGGISKAFGHRDGPAQNATFSSDFEITFVPQ 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,773,231
Number of Sequences: 28952
Number of extensions: 234092
Number of successful extensions: 664
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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