Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i08f
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_36224| Best HMM Match : ASC (HMM E-Value=1.9e-38)                   29   1.7  
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               28   5.3  
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)                 27   9.3  
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)               27   9.3  
SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
 Frame = -3

Query: 403  CKQFTTKSMLSLVPVTMPMFTPSHKFIQSH---CDYCESQSNGKSSKEEFSGSLPASAKS 233
            C   T+ S ++   +T P+  PSH   Q H   CD+  S S    +      ++P+  +S
Sbjct: 1002 CDHTTSHSTITQNAITQPVTVPSHNQSQYHHTKCDHTTSHSTITQNAITQPVTVPSHNQS 1061

Query: 232  R---VISPSLISDPWIFKSFN 179
            +    IS S I+ P    S N
Sbjct: 1062 QYHHTISHSTITQPVTVPSHN 1082


>SB_36224| Best HMM Match : ASC (HMM E-Value=1.9e-38)
          Length = 451

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 197 PWIRNEAWRYHPGFGTRWQRARK 265
           PW+    W   PGF T  + ARK
Sbjct: 239 PWVEKHGWEIPPGFSTNVRLARK 261


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 295 QSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIFKSFNS*GLFKLIQLWDT 140
           +  G +  + F  SL    ++  + P  +  PW+FK + S   +KL+  +DT
Sbjct: 154 EKRGHTDAQVFISSLRGFWEA--LMPLTLLPPWVFKLYKSQSYWKLLHSFDT 203


>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
          Length = 242

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 44  IVCEVNGNLLRMGGHG-HGPPYTVPH 118
           + C VNG+ L +GGHG H  P   PH
Sbjct: 66  LYCMVNGH-LAIGGHGPHTDPTRTPH 90


>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 195 SLSPLTAKAFSSSSSCGIPLTVNWE**GTVYGGP 94
           SLS L++ + SSSSS  IP+ V  +  GTV   P
Sbjct: 274 SLSSLSSSSSSSSSSYSIPVRVTNKKDGTVKDSP 307


>SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)
          Length = 2372

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 195 IHGSEMRLGDITLDLALAGREPENS-SLEDFPLDWDSQ*SQWLWINLWE 338
           +  + M LG I  D+ALA    +N  S +DF L      SQ LW  LWE
Sbjct: 258 LEAASMELGPIISDVALATDNLDNRFSQKDF-LQHHDHASQRLWF-LWE 304


>SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1078

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 439 SISNSILFQLQ*CKQ-FTTKSMLSLVPVTMPMFTPSHKFIQSHCDYCESQSNGKSSKEEF 263
           S+ ++IL  L    Q  T+ +  +  P+  P  TP+   ++  C +C   +  + S   +
Sbjct: 798 SLRDAILSTLHSAHQGVTSMTDRAESPIFWPGITPAITALRERCSHCNRMTPPQPSAPPY 857

Query: 262 SGSLPA 245
             +LPA
Sbjct: 858 PSTLPA 863


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,248,227
Number of Sequences: 59808
Number of extensions: 328933
Number of successful extensions: 801
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)