Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i08f
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.62 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   5.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.6  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 94  WAPVHSASLLPVYCQ 138
           WAP H+  LL VY Q
Sbjct: 298 WAPFHAQRLLAVYAQ 312


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 94  WAPVHSASLLPVYCQ 138
           WAP H+  LL VY Q
Sbjct: 283 WAPFHTQRLLYVYAQ 297


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 366 TRESIDFVVNCLHH 407
           T ES+D + N LHH
Sbjct: 459 TEESVDALCNTLHH 472


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 227 HPGFGTRWQRARKFF 271
           HPGF  +  RAR+ F
Sbjct: 199 HPGFADKEYRARRKF 213


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 83  GHGHGPPYTVPHY 121
           GHGH   +  PH+
Sbjct: 420 GHGHSHIHATPHH 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,887
Number of Sequences: 438
Number of extensions: 3310
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)