Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i08f
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61390.1 68418.m07702 exonuclease family protein contains exo...    29   2.5  
At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1) a...    29   2.5  

>At5g61390.1 68418.m07702 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 487

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +2

Query: 2   IPLSIFKRKSSSLI-IVCEVNGNLLRMGGHGHGPPYTVPHYSQFTVKGIPQLDELEKALA 178
           IP+  F    ++ I I  E+NG++ R     H   ++    +Q  +   P+ +E+E  L 
Sbjct: 396 IPMKGFLNCPTARIHIPTELNGDIDRYAAEIHQKEFSGATATQKLISSNPKAEEIESLLN 455

Query: 179 VKGLKDPWIRNEAWRYHPGFGTR 247
            + + D ++  E + Y    G R
Sbjct: 456 PRTVLDAFLSLEPYDYQQRAGIR 478


>At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1)
           annotation temporarily based on supporting cDNA
           gi|18483289|gb|AF466153.1|; supporting cDNA are SWITCH1
           splice variant S and SWITCH1 splice variant L (SWI1)
           GI:16033413 and GI:16033410
          Length = 639

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 340 PSHKFIQSHCDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISD 203
           PS   ++SH DY     N    K    G LP   +S V++  L  D
Sbjct: 77  PSMFSLRSHFDYSRMNRNKPMKKRSGGGLLPVFDESHVMASELAGD 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,647,642
Number of Sequences: 28952
Number of extensions: 248333
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)