Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i05r
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 34   0.11 
SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)         31   0.74 
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  

>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -2

Query: 741  EGMSQQSVTRVRRFQRELEAAEDRADVAESNLSLIRAKHRT 619
            E ++  ++ R R+ Q ELE AE+R +  ES+L   R + RT
Sbjct: 1922 EALAAANLARFRKAQTELEEAEERVEQLESSLQKARGRART 1962


>SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)
          Length = 1652

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 396  LSIHLIT*RTTRLIPDRNYAPLLTDERNAVAGCAWGACFAVAMLVSVFT 542
            L ++L T  T RLI   +Y  +L  ER  +AGC  G  F +   VS+ +
Sbjct: 1376 LVLNLFTRETIRLISFLSYICILECERLCLAGCCEGCIFGLDKSVSLLS 1424


>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1553

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -2

Query: 714  RVRRFQRELEAAEDRADVAESNLSLIRAKHRTFVTTSTVPGSQVYLVQESRALSSE 547
            R+R+ Q ELEA+E++     SN  L++ + R   +   + G +  L QE     SE
Sbjct: 1105 RIRKLQAELEASEEQR--RASNQELMQVRARLSESEHALHGHKEVLTQELIGKDSE 1158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,652,797
Number of Sequences: 59808
Number of extensions: 375869
Number of successful extensions: 776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)