Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i05r
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55350.4 68414.m06326 calpain-type cysteine protease family i...    29   3.2  
At1g55350.3 68414.m06325 calpain-type cysteine protease family i...    29   3.2  
At1g55350.2 68414.m06324 calpain-type cysteine protease family i...    29   3.2  
At1g55350.1 68414.m06323 calpain-type cysteine protease family i...    29   3.2  

>At1g55350.4 68414.m06326 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 478 FLSSVNKGA*FRSGISLVVR*VIKCIDRWRYYSFGFNNAICCFV 347
           + SSV  G    SGI+LVV  ++  +  +  Y F  ++A+C  +
Sbjct: 806 YTSSVYLGWAMSSGIALVVTAILPIVSWFATYRFSHSSAVCLMI 849


>At1g55350.3 68414.m06325 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 478 FLSSVNKGA*FRSGISLVVR*VIKCIDRWRYYSFGFNNAICCFV 347
           + SSV  G    SGI+LVV  ++  +  +  Y F  ++A+C  +
Sbjct: 806 YTSSVYLGWAMSSGIALVVTAILPIVSWFATYRFSHSSAVCLMI 849


>At1g55350.2 68414.m06324 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 478 FLSSVNKGA*FRSGISLVVR*VIKCIDRWRYYSFGFNNAICCFV 347
           + SSV  G    SGI+LVV  ++  +  +  Y F  ++A+C  +
Sbjct: 806 YTSSVYLGWAMSSGIALVVTAILPIVSWFATYRFSHSSAVCLMI 849


>At1g55350.1 68414.m06323 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 478 FLSSVNKGA*FRSGISLVVR*VIKCIDRWRYYSFGFNNAICCFV 347
           + SSV  G    SGI+LVV  ++  +  +  Y F  ++A+C  +
Sbjct: 806 YTSSVYLGWAMSSGIALVVTAILPIVSWFATYRFSHSSAVCLMI 849


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,027,710
Number of Sequences: 28952
Number of extensions: 252597
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)