Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i05f
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 35 0.009
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 34 0.012
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 33 0.020
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 33 0.020
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 33 0.027
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 32 0.061
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 31 0.14
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.19
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 30 0.25
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 28 1.00
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 28 1.00
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 1.3
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 27 1.3
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 1.7
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 26 3.0
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 3.0
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 3.0
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 26 3.0
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 26 3.0
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 4.0
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 4.0
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 5.3
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm... 25 5.3
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 25 5.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 7.0
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.3
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 9.3
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 25 9.3
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 9.3
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.3
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 34.7 bits (76), Expect = 0.009
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +1
Query: 247 IAKINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEETVQLY 426
+ ++ N +++ L E ++L+ E+AN + +R LE + I E +
Sbjct: 869 VLQLTNDLQEEQALAHEKDILV---ERANSRVEVVHERLSSLEN-QVTIADEKYEFLYAE 924
Query: 427 EQT-QRDLRNKQTELQRVSHELDKTREQK 510
+Q+ + DL NKQTE+ +S +L T E+K
Sbjct: 925 KQSIEEDLANKQTEISYLS-DLSSTLEKK 952
Score = 31.1 bits (67), Expect = 0.11
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 3/163 (1%)
Frame = +1
Query: 40 DLESVRVQLEEESEARLDLERQLVKANGEIGHWRSKFXXXXXXXXXXXXXXXXKYSXXXX 219
+L +VQLEEE E L + + + EIG R+KF +
Sbjct: 1749 ELNGFKVQLEEEREKNLRIRQDNRHMHAEIGDIRTKFDELVLEKTNLLKENSILQADLQS 1808
Query: 220 XXXXXXXTLIAKINNVEK-QKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIK 396
++++NN + QS++ L L++ + L+K + L R N ++
Sbjct: 1809 ---------LSRVNNSSSTAQQNAQSQLLSLTAQLQEVREANQTLRKDQDTLLRENRNLE 1859
Query: 397 SRLEE-TVQLYEQTQRDLRN-KQTELQRVSHELDKTREQKDAL 519
+L E + QL ++ R + E+++ L QKD L
Sbjct: 1860 RKLHEVSEQLNKKFDSSARPFDEIEMEKEVLTLKSNLAQKDDL 1902
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 34.3 bits (75), Expect = 0.012
Identities = 25/86 (29%), Positives = 41/86 (47%)
Frame = +1
Query: 271 KQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEETVQLYEQTQRDLR 450
KQK +L+S E + E + + +E + E+L K+ LEE QL E+ +L
Sbjct: 603 KQKMQLKSLREEIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEKYHEELL 662
Query: 451 NKQTELQRVSHELDKTREQKDALARE 528
+ Q +L + ELD T+ + E
Sbjct: 663 DNQQKLYDLRIELDYTKSNCKQMEEE 688
Score = 25.0 bits (52), Expect = 7.0
Identities = 23/92 (25%), Positives = 40/92 (43%)
Frame = +1
Query: 253 KINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEETVQLYEQ 432
KIN K ++ L DLE A TA L K + ++ N +KS + +
Sbjct: 870 KINFGNKLAKEHTEKISSLEKDLEAATKTASTLSKELKTVKSENDSLKSVSNDD----QN 925
Query: 433 TQRDLRNKQTELQRVSHELDKTREQKDALARE 528
++ + N+ + + VS L + E+ +A E
Sbjct: 926 KEKSVNNE--KFKEVSQALAEANEKLNARDEE 955
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 33.5 bits (73), Expect = 0.020
Identities = 20/81 (24%), Positives = 42/81 (51%)
Frame = +1
Query: 253 KINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEETVQLYEQ 432
+I ++ +++ +L+ E+E L + E+AN + +K+ E LE E+++ E ++ Q
Sbjct: 147 QITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEELRN---ECLKHDPQ 203
Query: 433 TQRDLRNKQTELQRVSHELDK 495
++R Q + V L K
Sbjct: 204 LDAEIRTLQDTFEEVERTLTK 224
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.5 bits (73), Expect = 0.020
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +1
Query: 367 QLERVNIEIKSRLEETVQLYEQTQRDLRNKQTELQRVSHELDK 495
+L++V E + R + + +YE+ RDL+NK T+L+ L+K
Sbjct: 1662 KLKKVVAETEFRSKAKISVYEKKTRDLQNKITQLEETIENLNK 1704
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/75 (21%), Positives = 38/75 (50%)
Frame = +1
Query: 268 EKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEETVQLYEQTQRDL 447
EK+ S + E+ + E + +ELQ +LE++ +S EE ++ +++ + L
Sbjct: 288 EKEISSQKQISELWMEKCEDCSLRLKELQNSNGELEKLLEAAQSSFEEQLESHKEAEASL 347
Query: 448 RNKQTELQRVSHELD 492
+++ L++ L+
Sbjct: 348 KSQINFLEKEVSSLE 362
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 33.1 bits (72), Expect = 0.027
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +1
Query: 313 IDLEKANGTARELQKRTEQLERVNIEIKSRLEETVQLYEQTQRDLRNKQTELQRVSHELD 492
ID + N R L K +L+ + S LEE +Q D RN+ L+ + HE+
Sbjct: 842 IDESELNSVKRSLLKYENKLQIIKSS-SSGLEEQMQRINSEISDKRNELESLEELQHEV- 899
Query: 493 KTREQKDALARE 528
TR ++DA E
Sbjct: 900 ATRIEQDAKINE 911
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 31.9 bits (69), Expect = 0.061
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = +1
Query: 247 IAKINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEI---KSRLEETV 417
I K+N+ E KSRL + +L+ + +L+ L++ E + RL +
Sbjct: 417 IKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTVSESEAERKRLFSSA 476
Query: 418 QLYEQTQRDLRNKQTELQRVSHELDK-TREQKDAL 519
Q + ++ NK T LQ ++E D+ +EQ++ L
Sbjct: 477 QEKQLQMKETVNKLTSLQEQNNEFDRQLKEQEEDL 511
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 30.7 bits (66), Expect = 0.14
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 373 ERVNIEIKSRLEETVQLYEQTQRDLRNK-QTELQRVSHELDKTREQKDALARE 528
ER ++++ RL+ + ++ L+NK Q ELQR S+E ++ +K ++E
Sbjct: 151 ERAEVDLQLRLKREKDALFEEEQTLQNKIQDELQRRSYETPQSSSKKKTNSKE 203
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.3 bits (65), Expect = 0.19
Identities = 20/82 (24%), Positives = 41/82 (50%)
Frame = +1
Query: 283 RLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEETVQLYEQTQRDLRNKQT 462
+L +E LI+ LE++N E L ++ +RL + + + + ++
Sbjct: 1148 QLTNEKNELIVSLEQSNSN-------NEALVEERSDLANRLSDMKKSLSDSDNVISVIRS 1200
Query: 463 ELQRVSHELDKTREQKDALARE 528
+L RV+ ELD ++ KD+L+ +
Sbjct: 1201 DLVRVNDELDTLKKDKDSLSTQ 1222
Score = 26.6 bits (56), Expect = 2.3
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Frame = +1
Query: 241 TLIAKINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIK-------S 399
T I++ +N++ ++ L + E L L G+ ++ + QLE +E+K S
Sbjct: 326 TRISEFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVELKESNRTIHS 385
Query: 400 RL---EETVQLYEQTQRDLRNKQTELQRVSHELDKTREQKDALARE 528
+L E + +EQ + L+ E Q DK +Q + E
Sbjct: 386 QLTDAESKLSSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEE 431
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 29.9 bits (64), Expect = 0.25
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = +1
Query: 253 KINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEETVQLYEQ 432
++ N++ R + E E I+L++ E QK + QL +E +LEE Y++
Sbjct: 63 QLENLKNDLKRKELEFEREQIELQRKLAEEHE-QKNSLQLRLTLVE--KQLEEQSTSYQK 119
Query: 433 TQRDLRNKQTELQRVSHEL 489
++RN++ Q HEL
Sbjct: 120 EIEEVRNEKEATQVKIHEL 138
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.00
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 265 VEKQKSRLQSEVEVLIIDLEKANGT---ARELQKRTEQLERVNIEIKSRLEETVQLYEQT 435
VE + L++ ++L EK T A ++R + LER +++ +LEE Y +
Sbjct: 88 VELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEMTDKYTKV 147
Query: 436 QRDL 447
+ +L
Sbjct: 148 KAEL 151
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 27.9 bits (59), Expect = 1.00
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 310 IIDLEKANG-TARELQKRTEQLERVNIEIKSRL 405
I D E+ NG A ELQ R +QLER N ++ ++L
Sbjct: 427 IQDKERNNGQNALELQARIQQLERRNEDMYNKL 459
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/74 (18%), Positives = 37/74 (50%)
Frame = +1
Query: 280 SRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEETVQLYEQTQRDLRNKQ 459
S L+ E E+ + + E + + ++ + ++ +L+ ++ +EQT+RD+ K
Sbjct: 345 SFLKDENELFMKQNQLYRTILYETRNKKTLVQNLLNSLEGKLQAHLEKFEQTERDISEKN 404
Query: 460 TELQRVSHELDKTR 501
E++ + + K +
Sbjct: 405 EEVKSLREKAAKVK 418
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 431 KPSATCATNKQNSSASPTNSTRPANRKTPS 520
+PS T+ QN+++ T S A KTPS
Sbjct: 775 RPSTANGTSNQNTTSEITTSETTATEKTPS 804
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 334 GTARELQKRTEQLERVNIEIKSRLE-ETVQLYEQTQRDLRNKQTELQRVSHELDKTREQK 510
G ++LQK+ Q ER+ + RL+ E + + ++ LR ++ + EL+K +++
Sbjct: 75 GKEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKER 134
Query: 511 DALARE 528
L +
Sbjct: 135 IRLQEQ 140
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 3.0
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +1
Query: 241 TLIAKINNVEKQKSRLQSEVEVLIIDLEKANGTA-RELQKRTEQLERVNIEIKS---RLE 408
+L + +++K++ R E II + KA +ELQ E+L NI++++ LE
Sbjct: 5 SLSPNVEDLKKKQIRQYKE----IIRISKAQSIRIKELQLENERLLSENIDLRTTAINLE 60
Query: 409 ETVQLYEQTQRDLRNKQTELQRVSHE 486
E ++ + + + K L HE
Sbjct: 61 EQLETVQNENEENKTKLAALLNRFHE 86
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 3.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 283 RLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSR---LEETVQLYEQTQRDLRN 453
RLQ+ L + + + REL+K+ EQ+E+ E+ LEE V L E D +
Sbjct: 441 RLQAIPYHLQVGQAWTSESERELEKKKEQVEKKQEELMQTRIVLEEQVFLVENMIEDAKA 500
Query: 454 KQ 459
K+
Sbjct: 501 KR 502
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = -2
Query: 506 CSRVLSSSWETR----WSSVCLLRRSRWVCSYN 420
C VL S + R WSS+ LRRS W S+N
Sbjct: 629 CYSVLLSRLKERKIHNWSSIGRLRRSEWPRSFN 661
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 337 TARELQKRTEQLERVNIEIKSRLEETVQLYEQTQRD--LRNKQTELQRVSHELDKTREQK 510
T R +K + + V I E V++ E ++ L+ K+ ELQ + E+D T +
Sbjct: 100 TWRARRKEKNRRDEVAEAILGLQHEIVRINEIMEKQFVLQKKKNELQSSTEEIDSTEKDF 159
Query: 511 DAL 519
D L
Sbjct: 160 DEL 162
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 434 PSATCATNKQNSSASPTN-STRPANRKTPSPAK 529
P+ T S +S T+ STRPAN +TP+ +
Sbjct: 168 PTQTSPGKPSTSESSQTDTSTRPANSQTPTTTR 200
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 4.0
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +1
Query: 295 EVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEETVQLYEQTQ----RDLRNKQT 462
+ EV+I D + + +++ + E I+ ++ E V L E+ + + R KQ
Sbjct: 408 DTEVIIEDQDNQEISNHVAEEKIDSDEEETID-DAKSEMFVDLSEEEEVRQYEEYRKKQK 466
Query: 463 ELQRVSHELDKTREQKDALARE 528
ELQ D+ Q + LARE
Sbjct: 467 ELQEELEFPDEVELQPNELARE 488
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 4.0
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = +1
Query: 268 EKQKSRLQSEVEV--LIIDLEKANGTARELQ-KRTEQLERVNIEIKSRLEETVQLYEQTQ 438
E K+ L +VE I E T +++ K T+ +E + + K+ +ET E+T+
Sbjct: 429 ENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSIEANDKDEKTDSKETEDKVEETE 488
Query: 439 R---DLRNKQTELQRVSHELDKTREQKDA 516
D++ K+T+ V + +KT ++ A
Sbjct: 489 SKEADVKAKETDSIEVDDKEEKTDSKETA 517
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 340 ARELQKRTEQLERVNIEIKSRLEETVQLYEQTQRD 444
ARE K + + IE+K R +ETV + Q +D
Sbjct: 70 AREFIKYGKNTATIEIEMKYRDDETVTITRQISQD 104
>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 458 KQNSSASPTNSTRPANRKTPSPA 526
K N ASPT +T+ N++ SPA
Sbjct: 198 KMNYPASPTFTTQEENKEVESPA 220
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 506 CSRVLSSSWETRWSSVCLLRRSRWVCSYNCTVSSRRD 396
C+RV SW WS+VC ++ + CS C +D
Sbjct: 222 CARV---SWA--WSTVCGCYKNTYTCSQTCLEDEVQD 253
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 244 LIAKINNVEKQKSRLQSEVEVLIIDLEK--ANGTARELQKRTEQLERVNIEIKSRLEET 414
L+ I+N+E++ + E EVL I+L A+ E+ E+L ++ ++E T
Sbjct: 782 LVKDISNLEEEIRTIDRETEVLRIELPSSIAHHNLDEIYAEREKLLEKRGYLRKQIERT 840
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 431 KPSATCATNKQNSSASPTNSTRPANRKTPS 520
KPSA+ +T + A T+ T PAN + S
Sbjct: 133 KPSASTSTAVPTTEARNTSITEPANSPSSS 162
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 135 VSDLTVSLDQLTFEVQTSFGLLFQLDANGFQIDLNL 28
VSD + QL QT G++ LD F +DL+L
Sbjct: 1082 VSDDFIPPPQLLQVGQTVEGVIISLDEANFMVDLSL 1117
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 9.3
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 307 LIIDLEKANGTARE-LQKRTEQLERVNIEIKSRLEETVQLYEQTQRDLRNKQTELQRVSH 483
L I+LE + E L + T ++ ++ + + YE Q +L Q L RVS
Sbjct: 219 LEIELESTKASHTENLGELTRNWQKAMDDVTEKFASKSKEYEDLQNELDATQKRLSRVS- 277
Query: 484 ELDKTREQKDAL 519
+L+ ++K L
Sbjct: 278 DLEHEVKEKTLL 289
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 434 PSATCATNKQNSSASPTNSTRP 499
PS+ + QN+S SPTNS RP
Sbjct: 181 PSSVLSGRMQNTS-SPTNSLRP 201
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 341 AVPFAFSKSMMRTSTSLCRRDFCFSTLLIF 252
A PF + + S C +CFS LL F
Sbjct: 213 ACPFCLEEKPVAARMSRCGHVYCFSCLLRF 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.126 0.317
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,833
Number of Sequences: 5004
Number of extensions: 28139
Number of successful extensions: 157
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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