Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i04r
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    27   2.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.1  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   6.1  
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    25   8.1  

>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 451 SFLVILFKTCSLIYFRYVLLSARPALHHEPS 543
           ++L + F+TCS +Y R  +  ARP L   PS
Sbjct: 223 AYLEVCFRTCSFVYVRDPV--ARPGLTEVPS 251


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 457  LVILFKTCSLIYFRYVLLSARP--ALHHEPSQDVI 555
            +++ F+ C L Y+RYV    R    L  + SQDV+
Sbjct: 2158 MLVFFQNCKLDYYRYVGDWVRHFITLFEDKSQDVV 2192


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 412 WIRPSRSVDVGINNNNKYQSKGKRGWLK 329
           ++ P+R V+   N N ++ + GKR WL+
Sbjct: 178 FLGPARFVNHDCNANCRFNTSGKRIWLR 205


>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 406 LSKNFSREA--KLLKKYSFLVILFKTCSLIYFRYVLLSARPALHHEP 540
           +S+  +RE+  K  ++  F ++++K C LIY R +  +    +H  P
Sbjct: 54  ISRILTRESLDKSFEQSHFQLLMYKKCKLIYTRTLRKNEFDGIHKFP 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,189
Number of Sequences: 5004
Number of extensions: 46792
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)