Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i04r
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53273| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_54188| Best HMM Match : Neur_chan_memb (HMM E-Value=2.8e-29)        29   4.9  
SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_53273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +1

Query: 403 VLSKNFSREAKLLKKYSFLVILFKT-CSLIYFRYVLLSARPALHHEPSQDVIFSGARRSA 579
           V  K  SR+AKL +K +F+V L  + CS++  R+  L+A   +       +IF      A
Sbjct: 32  VTGKIHSRKAKLSRKTNFIVELVGSFCSVLQRRFEKLAAGKLM------SIIFCTVECVA 85

Query: 580 RFRVL 594
           RFR++
Sbjct: 86  RFRIV 90


>SB_54188| Best HMM Match : Neur_chan_memb (HMM E-Value=2.8e-29)
          Length = 355

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 152 MSVSCTHNTGNANLGPDN 205
           M + C HN GN N GPD+
Sbjct: 246 MQMICKHNAGNVNHGPDS 263


>SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 400 MVLSKNFSREAKLLKKYSFLVILFKTCSLIYFRYVLLS 513
           M L K+F + A +LK +SF+V   K C  I   + ++S
Sbjct: 770 MKLIKHFIKIASMLKTWSFVVQYCKDCKNINSAFAIIS 807


>SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -2

Query: 614 IVKGQTAKTRK---RADLRAPLKITSCEGSWCSAGLADNKTYLK*IREHVLNKITRKLYF 444
           I+ G+T +TR    + +L   +     +GS  +A    NKT L  + +H + +  R    
Sbjct: 455 IMFGRTLRTRLDLVKPNLNRKMVNQQHQGSMQAANAPGNKTRLLEVGDHFMTRDYRPSES 514

Query: 443 FNNLASRLKFL 411
           FN+  + LK L
Sbjct: 515 FNDFVTDLKLL 525


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,608,354
Number of Sequences: 59808
Number of extensions: 333959
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)