Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i04r
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm recept...    29   4.4  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    29   4.4  
Z79759-5|CAB02140.2|  409|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AJ320257-1|CAC44622.1|  877|Caenorhabditis elegans putative telo...    28   7.6  
AF400665-1|AAL28024.1|  877|Caenorhabditis elegans CLK-2 protein.      28   7.6  
AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm rece...    28   7.6  
AC006605-5|AAK85444.3|  877|Caenorhabditis elegans Clock (biolog...    28   7.6  

>U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm receptor
           protein 135 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 394 NGMVLSKNFSREAKLLKKYSFLVILFKTCSLIYFRYVLLSARPALHHEPSQDVIF 558
           N +++    ++   LL  Y + + +F  CS++Y    +L  +P  H + S  V+F
Sbjct: 26  NAVLVFLIITKSENLLGNYRYAMFVFTLCSMVYSMVEIL-VQPVGHMKGSMFVVF 79


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
           protein C28H8.3 protein.
          Length = 1714

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 682 LLNPSLKIMIMIATDNVNYNICVLLKAKLPKR 587
           LLN      +MI+TDNV  N+C   +  L K+
Sbjct: 212 LLNDLTPSFLMISTDNVTQNVCASQEIDLTKQ 243


>Z79759-5|CAB02140.2|  409|Caenorhabditis elegans Hypothetical
           protein ZK858.5 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 376 NNNNKYQSKGKRGWLKISAVRFIDFEQH*HLFSV 275
           + NNK + K K G ++ S  +F+DF     L+SV
Sbjct: 71  SENNKEKEKWKNGKMQASQSKFVDFSFTRFLYSV 104


>AJ320257-1|CAC44622.1|  877|Caenorhabditis elegans putative
           telomere binding protein protein.
          Length = 877

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 421 SREAKLLKKYSFLVILFKTCSLIYFRYVLLSARPALH 531
           S+E  +++   +LV LF+TCS I +  + L++   +H
Sbjct: 346 SQERHIVRMILYLVHLFRTCSSIDWESLFLNSMDGVH 382


>AF400665-1|AAL28024.1|  877|Caenorhabditis elegans CLK-2 protein.
          Length = 877

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 421 SREAKLLKKYSFLVILFKTCSLIYFRYVLLSARPALH 531
           S+E  +++   +LV LF+TCS I +  + L++   +H
Sbjct: 346 SQERHIVRMILYLVHLFRTCSSIDWESLFLNSMDGVH 382


>AF016433-6|AAB65391.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 131 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +1

Query: 394 NGMVLSKNFSREAKLLKKYSFLVILFKTCSLIYFRYVLLSARPALHHEPSQDVI 555
           NG++L   +++  K+L  YS+L++ F   +++Y  YV +   P +  E    V+
Sbjct: 22  NGLLLYLIWTKARKVLGAYSYLMLAFSLYAILY-NYVDIITLPLVVIEKQMYVV 74


>AC006605-5|AAK85444.3|  877|Caenorhabditis elegans Clock
           (biological timing) abnormalityprotein 2 protein.
          Length = 877

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 421 SREAKLLKKYSFLVILFKTCSLIYFRYVLLSARPALH 531
           S+E  +++   +LV LF+TCS I +  + L++   +H
Sbjct: 346 SQERHIVRMILYLVHLFRTCSSIDWESLFLNSMDGVH 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,634
Number of Sequences: 27780
Number of extensions: 251770
Number of successful extensions: 622
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)