Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i04r
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    24   1.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.6  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 282 NKC*CCSKSINRTALIFSHPRFPFDWYLLL 371
           N+C      I  T + F    +P++W L+L
Sbjct: 66  NRCTSRQIGIANTLIPFMQQNYPYEWQLIL 95


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 574 SARFRVLAVWPLTIHKCY 627
           SA FR LA W LT  KC+
Sbjct: 363 SADFR-LAFWRLTCRKCF 379


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 34  RSYR*ERSLPDKHQVDKNHLETNYARR 114
           R Y+ +R     H V++ HL    +RR
Sbjct: 259 REYKKDRRYDQLHNVEEKHLRERTSRR 285


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 54  ISSGQASGGQESFGNELRAAYQSSEEIFKRIL 149
           + +   S G+E  GN L     SS  +  R++
Sbjct: 597 VIASSVSAGEEGLGNSLAITALSSILVLSRVI 628


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,406
Number of Sequences: 438
Number of extensions: 3668
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)