Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i04r
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52030.2 68418.m06456 TraB protein-related                          29   2.3  
At5g52030.1 68418.m06457 TraB protein-related                          29   2.3  
At5g42930.1 68418.m05234 lipase class 3 family protein low simil...    28   5.3  
At1g71080.1 68414.m08203 expressed protein                             28   5.3  
At2g04865.1 68415.m00502 expressed protein ; expression supporte...    28   7.1  

>At5g52030.2 68418.m06456 TraB protein-related
          Length = 402

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 39  LSLRAISSGQASGGQESFGNELRAAYQSSEEIFKRILVCQSLVPIT 176
           L L   SS  +S     FG+E RAA ++SEE+  ++++    + IT
Sbjct: 190 LLLAVFSSKLSSVADRPFGDEFRAARKASEEVGAQLVLGDRPIEIT 235


>At5g52030.1 68418.m06457 TraB protein-related
          Length = 258

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 39  LSLRAISSGQASGGQESFGNELRAAYQSSEEIFKRILVCQSLVPIT 176
           L L   SS  +S     FG+E RAA ++SEE+  ++++    + IT
Sbjct: 46  LLLAVFSSKLSSVADRPFGDEFRAARKASEEVGAQLVLGDRPIEIT 91


>At5g42930.1 68418.m05234 lipase class 3 family protein low
           similarity to Triacylglycerol Acylhydrolase
           (E.C.3.1.1.3) [Rhizomucor miehei] GI:230348; contains
           Pfam profile PF01764: Lipase
          Length = 237

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 63  GQASGGQESFGNELRAAYQSSEEIFKRILVCQSLVP 170
           GQ   G E FGN ++ + +  +  ++R + C  +VP
Sbjct: 164 GQPRVGDEEFGNFMKDSLKKFDVKYERYVYCNDMVP 199


>At1g71080.1 68414.m08203 expressed protein
          Length = 326

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 48  RAISSGQASGGQESFGNELRAAYQSSEE 131
           +++SSG  SGGQ S G+  R +  S +E
Sbjct: 293 KSVSSGSGSGGQSSSGSSSRGSGGSDDE 320


>At2g04865.1 68415.m00502 expressed protein ; expression supported
           by MPSS
          Length = 667

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 412 WIRPSRSVDVGINNNNKYQSK 350
           W+R SR VD G++ +NK +S+
Sbjct: 363 WVRKSRGVDGGVDLSNKMESE 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,344
Number of Sequences: 28952
Number of extensions: 229512
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)