Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i04f
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    30   0.30 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   0.93 
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   2.1  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   2.8  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   3.7  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   3.7  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   4.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.9  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   4.9  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   6.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   8.6  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    25   8.6  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +1

Query: 253 TSVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPTETIRKAATLLKL 432
           +  +T    V + S   +   P P  TP      E+    ++TP  P   ++KAA   + 
Sbjct: 156 SKTETPAPKVTSESTKKETAAPPPQETPTKSADAEL----AKTPSAPAAALKKAAEAAEP 211

Query: 433 SIVKKDEDDV 462
           + V +D  D+
Sbjct: 212 ATVTEDATDL 221


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 217 LIGENVTVSERVTSVDTARSSVDTPSVLPDFNIPTP-MNTPVNEITPEILLPISETPKIP 393
           ++G ++  + R T   T   ++ TP+V     +PT  M TPV E T   ++    TP + 
Sbjct: 236 VVGRSMVSTIRTT---TPMEAMITPTV-ETTTLPTAAMTTPVEETTTTPMVETMITPTVV 291

Query: 394 TETIRKAATLLKLSIV 441
           T T     T++  ++V
Sbjct: 292 TTTTPMVETMITPTVV 307


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 369 WQQNFGRNLIDRCVHRCRNVKVGQYAWCVDRRSS 268
           W+   GR+   +C H   N+KVG+   CV  ++S
Sbjct: 815 WKDGMGRDRYGQCSHYLSNLKVGE-PLCVAVKTS 847


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 172 DLPDDTFRMGLDNFHLIGENVTVSERVTSVDTARS-SVDTPSVLP 303
           D   D + +G+  F +     T  ER+  +DT RS S+  PS  P
Sbjct: 841 DAKVDMYSLGIILFEMCMTFSTSMERIRIIDTIRSPSISFPSTFP 885


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 88  PIVETMSSEQGQGPLSAGSNQLFATENLDLPDDTFRMGLDNFHLIGENVTVSERVTSVDT 267
           P    +S ++ Q   +   + L    N  +PD TFR   ++  +   +V V   VT  D 
Sbjct: 162 PTAVGVSLDEAQNDFNGAKDHLSNGVNTVVPDSTFRSTFESAQIPDASV-VQTVVTDADN 220

Query: 268 ARSSV 282
             +SV
Sbjct: 221 GAASV 225


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 64  IYDRIMESPIVETMSSEQGQ--GPLSAGSNQLFATENLDLPDDTFRMGLDNFHLIGENVT 237
           IYD  ME   V  ++ E  +    L   + ++ + +N D+ D TF+  ++ F L   N  
Sbjct: 532 IYDFFMEMEPVSDVALELVKIADKLLRVAKEVCSAKNNDVTDSTFKDIVEGFELNDLNSW 591

Query: 238 VSERVTSV 261
             +RVT+V
Sbjct: 592 DFDRVTNV 599


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 160 TENLDLPDDTFRMGLDNFHLIGENVTVSERVTSVDTARSSVDTPS--VLPDFNIPTPMNT 333
           +EN D  DD  ++   N  L+ +NV+      S +  +S    PS  ++    I    N 
Sbjct: 377 SENSDTSDDLTKVDSPNKSLVNDNVSAKHDKES-ENGKSKFPPPSQTLVTTSTISAAGNE 435

Query: 334 PVNEITPE 357
           P +EI  E
Sbjct: 436 PSDEIGSE 443


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +1

Query: 289  PSVLPDFNIPTPMN--TPVNE-ITPEI 360
            P +LP F IP P N  T V E I PEI
Sbjct: 1218 PILLPSFEIPEPCNTATSVQELINPEI 1244


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 250 VTSVDTARSSV--DTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPT 396
           ++S+    SSV  D PSVL   + P  ++ P +   P   +   +  ++PT
Sbjct: 131 ISSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQLSRLPT 181


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 349 TPEILLPISETPKIPTETIRKAATLLKLSIVKKDED-DVFVKPSPMT 486
           TPE++ P +    I +  +RK+++ L+    KK      F   SP+T
Sbjct: 289 TPEVVSPAATNSAISSPFVRKSSSDLEAKPSKKQRSTPAFSHDSPLT 335


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +1

Query: 199  GLDNFHLIG--ENVTVSERVTSVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPI 372
            GLD   +I     V +  R+  +  +RS + TP+ LP+    TP+ +  N + P +L  +
Sbjct: 1527 GLDTTEMISLVYPVQLQGRLERLIKSRS-LGTPTALPETQTYTPVRSRSNSLRP-MLARL 1584

Query: 373  SETPKIPTE 399
            S++  +  E
Sbjct: 1585 SDSKSVHGE 1593


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 337 VNEITPEILLPISETPKIPTETIRK 411
           V ++ PE+++P+++TP  P    RK
Sbjct: 129 VLKLCPELVIPLNDTPTSPPGVKRK 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,297
Number of Sequences: 5004
Number of extensions: 46796
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)