Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i04f
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0281 + 2086674-2087652,2089200-2089483 32 0.31
07_01_0589 - 4381188-4381433,4381509-4381604,4381673-4381858,438... 29 2.9
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631... 29 2.9
08_01_0618 - 5394841-5395036,5395179-5395244,5395727-5395769,539... 27 8.9
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 27 8.9
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 27 8.9
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 27 8.9
>11_01_0281 + 2086674-2087652,2089200-2089483
Length = 420
Score = 32.3 bits (70), Expect = 0.31
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 268 ARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIP-TETIRKAATLLKLSIVK 444
A S +P++ P F P P +TP+++ TP +ETP +P T + L+
Sbjct: 13 APPSPPSPALPPPFQ-PPPPDTPISDATPS----AAETPNLPDTPASASPFSDAALAADA 67
Query: 445 KDEDDVFVKPSPMTDGMSP 501
D D V P DG +P
Sbjct: 68 SDADASAVAAPPDDDGTNP 86
>07_01_0589 -
4381188-4381433,4381509-4381604,4381673-4381858,
4382704-4382825,4384127-4384189,4384777-4384930,
4387354-4387381,4387784-4387837,4387950-4388294,
4388382-4388638
Length = 516
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 217 LIGENVTVSERVTSVDTARSSVDTPSVLPDFNIPTPM 327
LIGE V+VS V+ DT+ S ++L D PT M
Sbjct: 412 LIGEGVSVSVHVSDTDTSLDSRIQENILSDPENPTRM 448
>04_04_0168 +
23259459-23260001,23260883-23262780,23263000-23263150,
23263851-23264669
Length = 1136
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 453 GRCIRETFADDRWHVAGENAAIRNRRSKQRDPYHEKGRCGLRLL 584
G + F DDR+H E+A R+ P + GRC +L
Sbjct: 194 GPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVL 237
>08_01_0618 -
5394841-5395036,5395179-5395244,5395727-5395769,
5396119-5396238,5396653-5396731,5396910-5397177,
5397262-5397305,5397431-5397502,5397756-5397825,
5397929-5397999
Length = 342
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/81 (27%), Positives = 35/81 (43%)
Frame = +1
Query: 322 PMNTPVNEITPEILLPISETPKIPTETIRKAATLLKLSIVKKDEDDVFVKPSPMTDGMSP 501
P + P E+ LPI + P +T++K K +V K EDD K +D SP
Sbjct: 75 PDDEPEKEVRER--LPIKKRLIFPGKTMKKINAKKKKKVVPKLEDD--SKTDKYSDQQSP 130
Query: 502 ARMLQFEIDGANNATPTMRRA 564
++ D T+R++
Sbjct: 131 SKQTDIP-DELETGEKTIRKS 150
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 457 DVFVKPSPMTDGMSPARMLQFEIDGANNATPT 552
+ F+ PSP G+SP + LQ ++ + +TPT
Sbjct: 305 ETFINPSPY--GISPNKPLQRHVNPSTRSTPT 334
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +1
Query: 232 VTVSERVTSVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEIL 363
+ VS + S +T + P F +P P + P+ P I+
Sbjct: 262 IQVSRSLGDAYLKHSQYNTEQIKPKFRLPEPFSRPILSANPSII 305
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 319 TPMNTPVNEITPEILLPISETPKIPTETIRKAATLLKLSIV 441
TP N P ++ +IL PISE KIP + + A+L + V
Sbjct: 1943 TP-NFPNFDVQQKILKPISEETKIPVDIDERFASLSSMVAV 1982
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,555
Number of Sequences: 37544
Number of extensions: 298826
Number of successful extensions: 953
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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