Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i04f
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18674| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 33 0.18
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 30 1.3
SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5) 30 1.7
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 29 3.0
SB_3840| Best HMM Match : MANEC (HMM E-Value=0.031) 29 3.0
SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6) 29 3.9
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 28 5.2
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_27106| Best HMM Match : PLDc (HMM E-Value=7e-05) 28 6.9
SB_58162| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-14) 28 6.9
SB_25486| Best HMM Match : Glycos_transf_3 (HMM E-Value=7.3) 28 6.9
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16) 28 6.9
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 28 6.9
SB_55806| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_37795| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_1115| Best HMM Match : NusG (HMM E-Value=2.4) 27 9.1
SB_52675| Best HMM Match : DUF823 (HMM E-Value=5.6) 27 9.1
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11) 27 9.1
SB_32400| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_18674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +1
Query: 142 SNQLFATENLDLPDDTFRMGLDNFHLIG----ENVTVSERVTSVDTARSSVDTPSVLPDF 309
S F TE+ D P F G + FH G E V+ + + + + + + + +++P
Sbjct: 69 SQYCFCTEDKDFPGTDFYTGKNEFHFYGWRGIEEVSSTTDIPATELNKGEISSTTIVPSV 128
Query: 310 NIPTPMNTPVNEIT 351
IPT ++ P +I+
Sbjct: 129 PIPTSLDMPSPDIS 142
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 447 GRGRCIRETFADDRWHVAGENAAIRNRRSKQRDPYHEKGRCGLR 578
GRGRC++ T R AG + +I RR+ + D KG C +R
Sbjct: 366 GRGRCVKNT-CKCRGGWAGSDCSINLRRAPKLDGVQSKGLCDVR 408
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 235 TVSERVTSVDTARSSVDTPSVLPDFNIPTPM-NTPVNEITPEILLPISETPKIPTET 402
T + + + T+ + TP+ P PTP +TP TP P TPK PT T
Sbjct: 78 TPTPKTPTPTTSTLTKPTPATTPTPTKPTPTAHTPTTP-TPTAHTPTKPTPKTPTPT 133
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +1
Query: 136 AGSNQLFATENLDLPDDTFRMGLDNFHLIGENVTVSERVTSVDTARSSVDTPSVLPDFNI 315
+G Q E+ LP+DT + + G+ V ++TS+++ R V +PS + I
Sbjct: 2180 SGKQQFAIKESSKLPEDTAKQ---DAKASGDRQVVRSKITSIESVRLDVISPSSVLSDGI 2236
Query: 316 PTPMNTPVNEITP 354
P +T + ++P
Sbjct: 2237 SLP-STRSDSVSP 2248
>SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)
Length = 565
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 139 GSNQLFATENLDLPDDTFRMGLDNFHLIGENVTVSERVTSVDTARSSVDTPSVLP 303
G N FA +N+DL +DT G + FH G + +++R D + P+ +P
Sbjct: 234 GVNVWFAVDNIDLLEDT-PTGQNTFH--GTVIVLNQRAEDGDPVHQPLVIPTKIP 285
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 289 PSVL-PDFNIPTPMNTPVNEITPEILLPISETPKIPTETIRKAATL 423
PSV P +PTP+ P P + P S P T AATL
Sbjct: 543 PSVFAPSSGVPTPVTAPPPAPPPSVFAPSSAVPTPATAPPPVAATL 588
>SB_3840| Best HMM Match : MANEC (HMM E-Value=0.031)
Length = 533
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 238 VSERVTSVDTARSSVDTPSVLP--DFNIPTPMNTPVNEITPEILLPISETPKIPTETIRK 411
V+ + S+ ++ DTPS+LP N P P N T + L I I T T+
Sbjct: 211 VTPDIPSIIPTEANPDTPSILPIEALNPDIPSVMPSNN-TEDPLDNIKSAKNISTVTMTT 269
Query: 412 AATLLKLSI 438
++ LKLS+
Sbjct: 270 QSSELKLSL 278
>SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 350 VISLTGVFIGVGMLKSGNTLGV 285
+I LTG+FIGVG + G T G+
Sbjct: 64 LIGLTGMFIGVGEIIGGLTFGI 85
>SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6)
Length = 569
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Frame = +1
Query: 310 NIPTPMNTPVNEITPEILL----------PISETPKIPTETIRKAATLLKLSIVKKDEDD 459
N+PTP N + ITP+ L P+S + + + K LL L+ +K E D
Sbjct: 12 NLPTPDNDNTSTITPQAALILTHHRLRHKPLSADAAVDEDDV-KTTPLLLLTAHRKIETD 70
Query: 460 VFVKPS 477
++ KP+
Sbjct: 71 LYSKPT 76
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/68 (27%), Positives = 25/68 (36%)
Frame = +1
Query: 235 TVSERVTSVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPTETIRKA 414
T + R T+ +T TP TP T TPE P + TP+ T A
Sbjct: 168 TTAPRTTTPETTTPETTTPRTTTPVTT-TPRTTTPETTTPETTTPRTTTPETTTPKKTTA 226
Query: 415 ATLLKLSI 438
A L +
Sbjct: 227 AKKAPLPV 234
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 283 DTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKI 390
D + PDF P P+ +I ++++P E P++
Sbjct: 80 DMMKINPDFKPPADYKPPLIKIQDKVMIPQDENPEV 115
>SB_27106| Best HMM Match : PLDc (HMM E-Value=7e-05)
Length = 515
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 442 KKDEDDVFVKPSPMTDGMSPARMLQFEIDGANNATPTMRRAV 567
++DE+ V + +P+T GM P + F I A + +R A+
Sbjct: 41 RRDENGVGTRATPVTPGMLPDTVNTFSIASAPSGVAGLRAAL 82
>SB_58162| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-14)
Length = 624
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 336 RCVHRCRNVKVGQYAWCVDRRSSSIYGRDPL--AHCHVFAD 220
+ +HR KV +WC D R S+IY P + C+V D
Sbjct: 484 KILHRRPLRKVNLDSWCNDIRDSAIYSSAPSDDSDCNVLCD 524
>SB_25486| Best HMM Match : Glycos_transf_3 (HMM E-Value=7.3)
Length = 370
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 442 KKDEDDVFVKPSPMTDGMSPARMLQFEIDGANNATPTMRRAV 567
++DE+ V + +P+T GM P + F I A + +R A+
Sbjct: 41 RRDENGVGTRATPVTPGMLPDTVNTFSIASAPSGVAGLRAAL 82
>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
Length = 621
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +1
Query: 268 ARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKI----PTETIRKAATLLKLS 435
+ V+ P PD P PV+ T I L + ET + P+ TI ++ + S
Sbjct: 271 SEEKVEEPETFPDSTEPEEEPEPVSS-TSNIDLLMDETAQPAQPQPSPTIIESPPAEESS 329
Query: 436 IVKKDEDDVFVKPSPMTDGMSPA 504
D ++ V+P P ++ M+P+
Sbjct: 330 KDVSDSEEKPVQPEPSSETMAPS 352
>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
Length = 1060
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = +1
Query: 97 ETMSSEQGQGPLSAGSNQLFATENLDLPDDTFRMGLDNFHLIGENVTVSERVTSVDTARS 276
+T S+ P + ++ + + T +H+ T + +T+ T +
Sbjct: 872 QTTSTHHITTPQTTSTHHITTPQTTSTHHITTPQTTSTYHITTPQTTSTHHITTPQTTST 931
Query: 277 -SVDTPSVLPDFNIPTPMNTPVNEIT 351
+ TP ++I TP T + IT
Sbjct: 932 YHITTPQTTSTYHINTPQTTSTHHIT 957
>SB_55806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 336 RCVHRCRNVKVGQYAWCVDRRSSSIYGRDPL--AHCHVFAD 220
+ +HR K+ +WC D R S+IY P + C+V D
Sbjct: 96 KILHRRPLRKINLDSWCNDIRDSAIYSSAPSDDSDCNVLCD 136
>SB_37795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 223 GENVTVSERVTSVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPTET 402
G + E V + AR V V D ++P P NE I LP S TP+ T T
Sbjct: 3 GSRRSDDENVVGITLARDEV----VCTDPDLPQPKEKHANEGNFTISLPTSLTPEPATRT 58
Query: 403 IRKAATL 423
+ L
Sbjct: 59 TDSSTEL 65
>SB_1115| Best HMM Match : NusG (HMM E-Value=2.4)
Length = 175
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 340 NEITPEILLPISETPKIPTET 402
NE PE+ LP E P PTET
Sbjct: 128 NEQAPEVKLPEPEQPDSPTET 148
>SB_52675| Best HMM Match : DUF823 (HMM E-Value=5.6)
Length = 190
Score = 27.5 bits (58), Expect = 9.1
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = +1
Query: 265 TARSSVDTPSVLPDFNIP--TPMNTPVNEITPEILLPISET-PKIPTETIRKAATLLKLS 435
T + T + IP T T +T I + I+ T + T T +AAT +S
Sbjct: 4 TTEPAATTAELTATTTIPYITVTATETETVTTTITVTITATLQETLTTTAAEAATAAAVS 63
Query: 436 IVKKDEDDVFVKPSPMTDGMS-PARMLQFEIDGANNATP 549
+K +V + PSP+++ S + LQ ++ A P
Sbjct: 64 TIKTIGINVSITPSPVSEWTSAEPKDLQSQMTMVPGAAP 102
>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
Length = 1496
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +1
Query: 238 VSERVT-SVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPTETIRKA 414
+S +T S+ + +S T S+ P PTP P+ ++ TP PT ++ A
Sbjct: 1331 ISNAITFSILASHTSFGTESLAPS---PTPSKEPLGGTWANTRSSLTTTPSFPTTSLMLA 1387
Query: 415 ATLLKLSIVKKDEDDVFVKPSP 480
I+ + + P+P
Sbjct: 1388 PVTPASLIISQATKNATSSPTP 1409
>SB_32400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 27.5 bits (58), Expect = 9.1
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = +1
Query: 265 TARSSVDTPSVLPDFNIP--TPMNTPVNEITPEILLPISET-PKIPTETIRKAATLLKLS 435
T + T + IP T T +T I + I+ T + T T +AAT +S
Sbjct: 4 TTEPAATTAELTATTTIPYITVTATETETVTTTITVTITATLQETLTTTAAEAATAAAVS 63
Query: 436 IVKKDEDDVFVKPSPMTDGMS-PARMLQFEIDGANNATP 549
+K +V + PSP+++ S + LQ ++ A P
Sbjct: 64 TIKTIGINVSITPSPVSEWTSAEPKDLQSQMTMVPGAAP 102
>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 27.5 bits (58), Expect = 9.1
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Frame = +1
Query: 70 DRIMESPIVETMSSEQGQGPLSAGSNQLFATENLDLPD-DTFRMGLDNFHLIGENVTVSE 246
D + E +V + +++ P++A +N + E L + D D G F L ++
Sbjct: 72 DAVAEDEVVGEIETDKTSIPVTAPANGVI--EELFVADGDKVEKGQQLFKL-----KLTG 124
Query: 247 RVTSVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPTETIRKAAT 420
+ + A SS P P P P E P+I P +PTE +++ T
Sbjct: 125 ALPKKEAAASSTPPP---PAKEAPLPPPPAQQEAVPDIPTSPPPVPPLPTEPLQQTTT 179
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,463,319
Number of Sequences: 59808
Number of extensions: 366144
Number of successful extensions: 1228
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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