Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i04f
(613 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 27 0.11
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 26 0.33
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 25 0.58
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 5.4
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 5.4
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 21 7.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 7.2
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 7.2
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 21 7.2
AF134818-1|AAD40234.1| 130|Apis mellifera lambda crystallin-lik... 21 9.5
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 27.5 bits (58), Expect = 0.11
Identities = 17/85 (20%), Positives = 36/85 (42%)
Frame = +1
Query: 94 VETMSSEQGQGPLSAGSNQLFATENLDLPDDTFRMGLDNFHLIGENVTVSERVTSVDTAR 273
VE M + + LS G N E + ++ ++ LD+ ++ + + + + +D +
Sbjct: 296 VEDMEYDDIKTELSTGMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQLDDGIDILDDVK 355
Query: 274 SSVDTPSVLPDFNIPTPMNTPVNEI 348
+ +PD I P N +I
Sbjct: 356 CEDERVISIPDKEITVPSNEETIDI 380
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 25.8 bits (54), Expect = 0.33
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 220 IGENVTVSERVTSVDTARSSVDTPSVLPDFNIPTPMNTPVNEIT 351
IGE +TVS T +S+ + +++ + T + P N+I+
Sbjct: 421 IGEVITVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDIS 464
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 25.0 bits (52), Expect = 0.58
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 328 NTPVNEITPEILLPISETPKIPTETIRKAATLLKLSIVKKDEDDVFVKPSPMTDGMSPAR 507
N +I P+IL I +TP I I K+ +K I K E F+ P R
Sbjct: 29 NGDYTKIMPDILTAIGQTPLIKLNNIPKSYG-IKCEIYAKCE---FLNPGGSVKDRIAYR 84
Query: 508 MLQ 516
M+Q
Sbjct: 85 MIQ 87
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 5.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 365 SKISGVISLTGVFIGVGML 309
SKI ++S+ G+ IG+G L
Sbjct: 24 SKIEFILSVVGLAIGLGNL 42
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 5.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 365 SKISGVISLTGVFIGVGML 309
SKI ++S+ G+ IG+G L
Sbjct: 77 SKIEFILSVVGLAIGLGNL 95
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 21.4 bits (43), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 535 LLRLFRIAAFSPATCHRSSAKVSR 464
LLRLF I SPA+ ++ + +R
Sbjct: 88 LLRLFHIPQISPASTAKALSDKTR 111
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.4 bits (43), Expect = 7.2
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +3
Query: 75 HYGVAHCRDDELRAGSRPLIGRFKSIVC 158
HY AH DEL+ K ++C
Sbjct: 1440 HYRTAHGNLDELQLSRHATSHELKGLLC 1467
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.4 bits (43), Expect = 7.2
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +3
Query: 75 HYGVAHCRDDELRAGSRPLIGRFKSIVC 158
HY AH DEL+ K ++C
Sbjct: 1436 HYRTAHGNLDELQLSRHATSHELKGLLC 1463
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 21.4 bits (43), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 535 LLRLFRIAAFSPATCHRSSAKVSR 464
LLRLF I SPA+ ++ + +R
Sbjct: 178 LLRLFHIPQISPASTAKALSDKTR 201
>AF134818-1|AAD40234.1| 130|Apis mellifera lambda crystallin-like
protein protein.
Length = 130
Score = 21.0 bits (42), Expect = 9.5
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 413 ALRMVSVGILGVSEIGSKISGVISLTGVFIG 321
A R+V+ GIL ++ + +S + + F+G
Sbjct: 21 AWRLVADGILNAKDVDAVMSEGLGMRYAFLG 51
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,817
Number of Sequences: 438
Number of extensions: 3156
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -