Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i04f
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 32 0.34
At2g02955.1 68415.m00243 expressed protein ; expression supporte... 31 0.60
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 31 0.80
At3g60850.1 68416.m06807 expressed protein 29 3.2
At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea... 28 4.2
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 28 4.2
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2... 28 5.6
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t... 28 5.6
At2g40070.1 68415.m04923 expressed protein 28 5.6
At5g65280.1 68418.m08211 lanthionine synthetase C-like family pr... 27 7.4
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 7.4
At5g61390.1 68418.m07702 exonuclease family protein contains exo... 27 9.8
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa... 27 9.8
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 31.9 bits (69), Expect = 0.34
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 256 SVDTARSSVDTPSVLPDFNIPTPM-NTPVNEITPEILLPISETPKIPTETIRK 411
S D TPS + PTP+ TPV++ TP P+ + +PT ++K
Sbjct: 408 SKDKCAGGSSTPSKPSPVHKPTPVPTTPVHKPTPVPTTPVQKPSPVPTTPVQK 460
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +1
Query: 253 TSVDTARSSVDTPSVLPDFNI--PTPM-NTPVNEITPEILLPISETPKIPTETIRKAATL 423
+S + S V P+ +P + PTP+ TPV + +P P+ + +PT + + + +
Sbjct: 416 SSTPSKPSPVHKPTPVPTTPVHKPTPVPTTPVQKPSPVPTTPVQKPSPVPTTPVHEPSPV 475
Query: 424 LKLSIVKKD--EDDVFVKPSPMTDGMSP 501
L + K KP P + P
Sbjct: 476 LATPVDKPSPVPSRPVQKPQPPKESPQP 503
>At2g02955.1 68415.m00243 expressed protein ; expression supported
by MPSS
Length = 666
Score = 31.1 bits (67), Expect = 0.60
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 97 ETMSSEQGQ-GPLSAGSNQLFATENLDLPDDTFRMGLDN 210
ET+ SE+ LS G N+ FA D PDDT+R+ +DN
Sbjct: 440 ETLESEKDLVSYLSLGKNEFFAGLEEDSPDDTYRI-VDN 477
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 30.7 bits (66), Expect = 0.80
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Frame = +1
Query: 91 IVETMSSEQGQGPLSAGS-NQLFATENLDLPDDTFRMGLDNFHLIGENVTVSERVTSVDT 267
+ T++S QG S + F N+ L ++ + L + ++GE+VT+S+
Sbjct: 413 LTSTLASMQGWTEKRLLSYHDYFQRGNVGLIENLLPLALSSSKILGEDVTISQMNGLEKG 472
Query: 268 ARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPTETIRKAATLLKLSIVKK 447
VD+ D+ I + +++ + I ET E +AAT+L L + K+
Sbjct: 473 DVKLVDSSGDRVDYYIRASIKNAFSKVIENMKAEIEET----EEGEEEAATML-LRLAKE 527
Query: 448 DED 456
ED
Sbjct: 528 TED 530
>At3g60850.1 68416.m06807 expressed protein
Length = 648
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 492 HVAGENAAIRNRRSKQRDPYHEKGRCG 572
H AGE +I+ R +R+PY K RCG
Sbjct: 316 HRAGEPVSIKKSRILKREPYQSK-RCG 341
>At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly
identical to cohesion family protein SYN3 [Arabidopsis
thaliana] GI:12006362; supporting cDNA
gi|12006361|gb|AF281155.1|AF281155
Length = 693
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 127 PLSAGSNQLFATENLDLPDDTFRMGLDNFHLIGENVTVSERV-TSVD 264
P S Q + DL DDT M DN E++T+++++ T +D
Sbjct: 105 PESVTLPQALNLDEFDLEDDTLDMEFDNHTRSEEDITLTDQIPTGID 151
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +1
Query: 265 TARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISE----TPKIPTETIRKA 414
T + S PS+ P PTP +P TP + P + TP +P T +K+
Sbjct: 103 TPKKSPSPPSLTPFVPHPTPKKSPSPPPTPSLPPPAPKKSPSTPSLPPPTPKKS 156
>At4g12770.1 68417.m02004 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 909
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 244 ERVTSVDTARSSVDTPSVLPD--FNIPTPMNTPVNEITP-EILLPISETPKIPTETIRKA 414
E +D+ +SV PS +P N P P N+ E P S P PTE +RKA
Sbjct: 660 ENNNDLDSFFNSVSRPSSVPRQRTNPPDPFQDSWNKGGSFESSRPSSRVPSGPTENLRKA 719
Query: 415 AT 420
++
Sbjct: 720 SS 721
>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 177
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/59 (22%), Positives = 25/59 (42%)
Frame = +1
Query: 229 NVTVSERVTSVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPTETI 405
N+ T+ D + P +P +P+P + +P + P TP +PT ++
Sbjct: 16 NILFFTLTTATDCRCNLSPKPRTVPSPKVPSPKYPSPSIPSPSVPTPSVPTPSVPTPSV 74
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 235 TVSERVTSVDTARSSV--DTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPTETIR 408
T S+ TS + SV TPS P+ TP++ T P S P++TI
Sbjct: 252 TASKPTTSTARSAGSVTRSTPSTTTKSAGPSRSTTPLSRSTARSSTPTSRPTLPPSKTIS 311
Query: 409 KAAT 420
+++T
Sbjct: 312 RSST 315
>At5g65280.1 68418.m08211 lanthionine synthetase C-like family
protein contains Pfam domain, PF05147: Lanthionine
synthetase C-like protein
Length = 433
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 367 PISETPKIPTETIRKAATLLKLSIVK 444
P + T +PTE+ +AATLLK +V+
Sbjct: 37 PSAPTISLPTESFLRAATLLKNQVVE 62
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 253 TSVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPTETIRKAATLLKL 432
TS + S +PS+ P +P + P + ++P P+S +P P ++ L L
Sbjct: 22 TSSSSLSPSSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLSSL 81
Query: 433 S 435
S
Sbjct: 82 S 82
>At5g61390.1 68418.m07702 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 487
Score = 27.1 bits (57), Expect = 9.8
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 223 GENVTVSERVTSVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEIL---LPISETPKIP 393
GEN+T ++ V +A + D P M+T NEI PE+L +P+ E
Sbjct: 231 GENMTTIPILSFVSSAEAQTD----------PFDMSTLRNEIAPEVLQSDVPMEEEQNQQ 280
Query: 394 TETIRKAAT 420
+ET+ T
Sbjct: 281 SETVASEGT 289
>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
family protein contains Pfam profile PF01190: Pollen
proteins Ole e I family
Length = 401
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 277 SVDTPSVLPDFNIPTPMNTPVNEI--TPEILLPISETPKIPTETIRKAATL 423
S+ TP++ P+ IP+P + P + TP L I P PT T+ T+
Sbjct: 280 SIPTPTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPIPTI 330
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,147,991
Number of Sequences: 28952
Number of extensions: 242915
Number of successful extensions: 752
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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