Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i03r
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    29   0.55 
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    27   2.2  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    26   3.9  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   6.8  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   6.8  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    25   9.0  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = +1

Query: 127 ICFPEMYIDSHKTFYLIDRL 186
           +C  E+++D+H+TFY ++++
Sbjct: 333 VCISEVHLDNHQTFYALEKI 352


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 160 KTFYLIDRLIALGDLEKAHY*DNNISIY 243
           K  + I +   LG +EK HY DN  SIY
Sbjct: 153 KKKHAIQQASLLGHMEKLHYFDNQGSIY 180


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 240 YRYIIISIVCFFKITKCD*TVDKIKRLMRIYVHFWKTDKKGYNML 106
           Y Y  ++  C F  TK +   D +++L  I ++  K  +K  N+L
Sbjct: 84  YHYYEVAATCIFLATKVE---DSVRKLRDIVINCAKVAQKNSNVL 125


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 606 ATPISGDIANSSRKYLDCHHCGMRVHTLVVREI 508
           ++PI   + + + +    HHC  + +TL+ R+I
Sbjct: 331 SSPIQWSLISKNMRNRHRHHCRWKYYTLISRDI 363


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 417 NHNHYCPNCNKVIGYQLPFNYKKIF 343
           N+NH C NC+K +  ++    K+ +
Sbjct: 307 NNNHLCDNCHKPVNCEVEDTCKEAY 331


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 161 LCESMYISGKQIRRVTTCCMWLSNIG*VRFY 69
           LCE   ++ +    +  C  WL+N+  + FY
Sbjct: 200 LCEVNQVTQQHPNDMVLCVQWLANVSLLLFY 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,447
Number of Sequences: 5004
Number of extensions: 35404
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)