Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i03r
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0743 - 5530184-5531078,5531160-5531405,5531815-5532450,553...    28   5.3  
12_02_0725 - 22545423-22546251,22546352-22546547,22546791-225469...    28   7.0  
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009...    28   7.0  
03_06_0413 + 33756151-33756475,33756837-33756945,33757004-337570...    27   9.2  

>02_01_0743 -
           5530184-5531078,5531160-5531405,5531815-5532450,
           5534499-5534607,5536157-5536321,5536446-5536543,
           5536648-5536898
          Length = 799

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 559 QVLSRRVCYIPGNGCSCYD 615
           +V + RVCY P NG  C+D
Sbjct: 275 RVAAYRVCYTPVNGSECFD 293


>12_02_0725 -
           22545423-22546251,22546352-22546547,22546791-22546973,
           22547076-22547275,22548030-22548133
          Length = 503

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 312 SLVRREIGYLTEHSLAMRLIHVLIYRYIIISIVC 211
           S   +E G+ +EHS  MRL+++   R+  + +VC
Sbjct: 34  SCPEKEQGFASEHSKGMRLVNLNGLRFKQLKLVC 67


>03_06_0198 -
           32299480-32299643,32300084-32300126,32300843-32300929,
           32301063-32301098,32301187-32301295,32301408-32301499,
           32302029-32302115,32303887-32304222
          Length = 317

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 7/29 (24%), Positives = 20/29 (68%)
 Frame = +1

Query: 127 ICFPEMYIDSHKTFYLIDRLIALGDLEKA 213
           +C  ++  + HK +Y++D ++  G+L+++
Sbjct: 209 VCELDLIFNFHKAYYILDEILIAGELQES 237


>03_06_0413 +
           33756151-33756475,33756837-33756945,33757004-33757058,
           33757059-33757094,33757196-33757282,33757737-33757808
          Length = 227

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/39 (20%), Positives = 23/39 (58%)
 Frame = +1

Query: 100 HIQHVVTLLICFPEMYIDSHKTFYLIDRLIALGDLEKAH 216
           H      L +C  ++  + HK ++++D ++  G+L++++
Sbjct: 155 HSSVFAMLQVCELDLIFNFHKAYFILDEVLIAGELQESN 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,391,149
Number of Sequences: 37544
Number of extensions: 220333
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)