Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i03r
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_4165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 161 LCESMYISGKQIRRVTTCCM 102
           L E +Y  G+QIRRV  CC+
Sbjct: 94  LFEKIYNRGRQIRRVAQCCV 113


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 585 IANSSRKYLDCHHCGMRVHTLV 520
           +A+ SR  + C  CG R HTL+
Sbjct: 169 LASDSRSKISCSECGKRNHTLL 190


>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 366 PFNYKKIFYVS*-EISTE*SLVRREIGYLTEHSLAMRLIHVLIYRYIIISIVCFFKITK 193
           P N K+IF V   +   + +L RRE G    H L+ +L  V +    + S    F ITK
Sbjct: 658 PVNSKRIFCVKRGQKRFDGALTRREPGQCVSHGLSSKLCAVSVVSSFMDSGASTFLITK 716


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,931,869
Number of Sequences: 59808
Number of extensions: 266058
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)