Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i03r
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa...    29   3.3  
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica...    29   3.3  
At5g13190.1 68418.m01510 expressed protein                             28   5.8  
At3g16150.1 68416.m02039 L-asparaginase, putative / L-asparagine...    27   7.7  
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd...    27   7.7  

>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 162

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +1

Query: 127 ICFPEMYIDSHKTFYLIDRLIALGDLEKA 213
           +C  ++  + HK +Y++D L+  G+L+++
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQES 126


>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
           to clathrin assembly protein AP19 GI:2231698 from
           [Arabidopsis thaliana]
          Length = 161

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +1

Query: 127 ICFPEMYIDSHKTFYLIDRLIALGDLEKA 213
           +C  ++  + HK +Y++D L+  G+L+++
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQES 126


>At5g13190.1 68418.m01510 expressed protein
          Length = 134

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 429 DCFKNHNHYCPNC-NKVIGYQ 370
           DC  N  H+CP C NKV  ++
Sbjct: 92  DCLWNKQHHCPQCGNKVADFE 112


>At3g16150.1 68416.m02039 L-asparaginase, putative / L-asparagine
           amidohydrolase, putative similar to Swiss-Prot:P30364
           L-asparaginase (EC 3.5.1.1) (L-asparagine
           amidohydrolase) [Lupinus angustifolius]
          Length = 325

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 449 MRGSKQRTRQISAMTWFKSPISLTTSVCTLMPQWWQSKYFLDEFA 583
           M G+K+R   +S +T  K+PISL   V    P  + +    ++FA
Sbjct: 85  MDGTKRRCGAVSGITTVKNPISLARLVMDKSPHSYLAFSGAEDFA 129


>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
           (GI:16751524) [Schizosaccharomyces pombe]; weak
           similarity to androgen-induced prostate proliferative
           shutoff associated protein (GI:4559410) [Homo sapiens]
          Length = 1285

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 469 DKADQRYDVVQEPYFSHDQRVYSHAAVVAIQVLSRRVCYIPGN 597
           +KA      +QE     D RV + A +VA  ++   + Y+P N
Sbjct: 360 NKASGVLTAIQERLLDFDDRVRTQALIVACDIMKFNMKYVPLN 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,940,939
Number of Sequences: 28952
Number of extensions: 181014
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)