Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i03f
         (621 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2QEP9 Cluster: Putative frameshift precursor; n=1; Asp...    37   0.34 
UniRef50_A1CFA0 Cluster: MYB DNA-binding domain protein; n=1; As...    36   0.78 
UniRef50_P53327 Cluster: Antiviral helicase SLH1; n=11; Saccharo...    33   5.5  
UniRef50_Q60DN3 Cluster: Integrase core domain containing protei...    32   9.6  

>UniRef50_A2QEP9 Cluster: Putative frameshift precursor; n=1;
           Aspergillus niger|Rep: Putative frameshift precursor -
           Aspergillus niger
          Length = 222

 Score = 37.1 bits (82), Expect = 0.34
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = -2

Query: 311 TRPPRGVSCCRCWVYRRCLH--HRWVDVRVT---LVARRLGPHLDKQQMNRQI 168
           +RP   +SCCR WV  R +H  HR + V V     + R + PH+ KQ   R I
Sbjct: 32  SRPAMYLSCCRKWVATRLMHGDHRTISVNVDASFFLTRAVLPHMRKQGYGRII 84


>UniRef50_A1CFA0 Cluster: MYB DNA-binding domain protein; n=1;
           Aspergillus clavatus|Rep: MYB DNA-binding domain protein
           - Aspergillus clavatus
          Length = 980

 Score = 35.9 bits (79), Expect = 0.78
 Identities = 26/127 (20%), Positives = 48/127 (37%)
 Frame = +3

Query: 147 SNDEILKYLPIHLLFIEMRSQSSGYQGYPYINXXXXXXXXXXXXXXXXXXXXXXXMPRRQ 326
           SNDEI   +   ++  + + +S G + +P                           P  Q
Sbjct: 584 SNDEINGKVDPRIIAQDTKLKSKGVKDHPGSFSKVSSQVSANEKPSLQNTPSKKINPAVQ 643

Query: 327 VTRLDKERVVFINIPQDLDRPSRINEAQNPTTSNAASSANDIITEHQLPDRAGGSNLHQT 506
              +DK+    I   +  D+P  I++AQ P     +     +  +H+ P+   GS+    
Sbjct: 644 PKSIDKQAAKSIETLKAKDQPKSISQAQAPEQQKPSGQKKKV--QHETPESETGSSSDSP 701

Query: 507 DDNERDS 527
            D++ DS
Sbjct: 702 SDSDSDS 708


>UniRef50_P53327 Cluster: Antiviral helicase SLH1; n=11;
            Saccharomycetales|Rep: Antiviral helicase SLH1 -
            Saccharomyces cerevisiae (Baker's yeast)
          Length = 1967

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 460  SVIISLADEAAFDVVGFCASLIRLGRSKSWGMFINTTLSLSKRVTCRRGILDH 302
            S + S ++  A + V  C +L  +G ++ WG F N  L++ K +  R    DH
Sbjct: 890  SALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLWAFDH 942


>UniRef50_Q60DN3 Cluster: Integrase core domain containing protein;
           n=1; Oryza sativa (japonica cultivar-group)|Rep:
           Integrase core domain containing protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 1021

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 411 NPTTSNAASSANDIITEHQLPDRAGGSNLH-QTDDNERDSQXXXXXXXXXXXXXYIDLP- 584
           N   SNA S  ++II+EH     AGGSN++  TD ++ +                 D P 
Sbjct: 692 NDHMSNAPSGESNIISEHAPEQEAGGSNINAPTDTHDTEDPGAGGSTGFDENTAGSDGPD 751

Query: 585 -SDPCGGNAA 611
            SD   G+AA
Sbjct: 752 GSDGFDGSAA 761


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,396,216
Number of Sequences: 1657284
Number of extensions: 10876645
Number of successful extensions: 25427
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25400
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)