Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i03f
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   8.8  

>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 333 RLDKERVVFI---NIPQDLDRPSRINEAQNPTTSNAASSANDIITEH 464
           +LD +R + +   N+   L+ PS +  ++NPT S+  SSAN  I  +
Sbjct: 65  KLDSQRKLSLKSGNMWDSLNAPSELT-SKNPTVSSTTSSANPAIVSN 110


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 374 LGDVYKHHPFLI*TCDLSPWHTRPPRGVSCCRCWVYRRCLH 252
           LGD++++   LI  CD + W        S    + +RR L+
Sbjct: 399 LGDIFEYFFSLIHDCDYAIWSVHDEHQFSELLAFYHRRALN 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,477
Number of Sequences: 5004
Number of extensions: 44381
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)