Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i03f
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235...    31   0.56 
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267           31   0.97 
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706...    29   3.0  
05_04_0100 + 18001824-18001831,18001953-18002151                       28   5.2  
01_01_0552 - 4065623-4065698,4066133-4066218                           28   5.2  
01_03_0212 + 13842142-13842634,13842727-13843319                       27   9.1  
01_03_0209 - 13820980-13821572,13821665-13822157                       27   9.1  

>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
            17823948-17824061,17824145-17824297,17826928-17827071,
            17827162-17827516,17828574-17828741,17829522-17829751,
            17829916-17830049,17830686-17830749
          Length = 1163

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +3

Query: 321  RQVTRLDKERVVFINIPQ--DLDRPSRINEAQNP-TTSNAASSANDIITEHQLPDRAGGS 491
            R+V+ L +E V      Q  D  RPS    A  P TTS+  S +  + ++ QL  +   S
Sbjct: 803  REVSALSQEHVQSAQPQQLPDCARPSSSEMATTPATTSSQFSPSTAVTSQAQLQHQIVSS 862

Query: 492  NLHQTD 509
             +HQ+D
Sbjct: 863  QMHQSD 868


>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
          Length = 346

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 158 NIEIFADSFAVYRDEVPIFGLPRLPLHQPTGGGGTFGR 271
           N    A + A YRDE+P++   R+ L++  G G   GR
Sbjct: 304 NFAAIAPAGAAYRDELPVYETTRVALNRAIGHGYGHGR 341


>12_02_0738 +
           22669557-22669756,22669868-22669916,22670620-22670657,
           22670977-22671058,22671146-22671195,22671381-22671847,
           22671992-22672155,22672242-22672448,22672554-22672710,
           22672858-22672965,22673161-22673234,22673364-22673521,
           22673728-22673788,22673858-22673965
          Length = 640

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +3

Query: 318 RRQVTRL-DKERVVFINIPQDLDRPSRINEAQNPTTSNAASSANDIITEHQLPDRA--GG 488
           + +V +L D+      +IP D    + I E  +PT++ AA  +N   ++HQ+P++   G 
Sbjct: 419 KTKVNKLKDRAHAKLDDIPSDFVMKNNIPEPISPTSAAAAGPSNR--SDHQMPNQGTIGA 476

Query: 489 SNL 497
            NL
Sbjct: 477 ENL 479


>05_04_0100 + 18001824-18001831,18001953-18002151
          Length = 68

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 390 SRINEAQNPTTSNAASSANDIITEHQLPD 476
           S + E QNP+TSN AS++   + +  L D
Sbjct: 23  SLVEEGQNPSTSNGASNSQKNVEDKDLLD 51


>01_01_0552 - 4065623-4065698,4066133-4066218
          Length = 53

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +1

Query: 40  EKNQIDKDLFFCCLIDFSCC-C*YEYEITITKCLVC 144
           +K   DK   + CL    CC C YE      +CL C
Sbjct: 17  KKRHEDKGCLYACLFTLCCCFCCYETCECCLECLCC 52


>01_03_0212 + 13842142-13842634,13842727-13843319
          Length = 361

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 293 RRAVVEYATATSHTFR*GKGGVYKHPPRFGS 385
           R+ V  Y  A++  F+  KGGVYK P   GS
Sbjct: 271 RQPVTVYIDASAQEFQFYKGGVYKGPCNPGS 301


>01_03_0209 - 13820980-13821572,13821665-13822157
          Length = 361

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 293 RRAVVEYATATSHTFR*GKGGVYKHPPRFGS 385
           R+ V  Y  A++  F+  KGGVYK P   GS
Sbjct: 271 RQPVTVYIDASAQEFQFYKGGVYKGPCNPGS 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,888,729
Number of Sequences: 37544
Number of extensions: 324290
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)