Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i03f
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                31   1.00 
SB_44263| Best HMM Match : Pea-VEAacid (HMM E-Value=3.4)               28   7.0  
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)            27   9.3  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.3  
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    27   9.3  

>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 628

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 320 PWHTRPPRGVSCCRCWVYRRCLHHRWVDVRV 228
           PW TRP   +S CR W +  CL+ R V  R+
Sbjct: 91  PWTTRPWTPISSCRSWEF-SCLNGRCVFYRL 120


>SB_44263| Best HMM Match : Pea-VEAacid (HMM E-Value=3.4)
          Length = 344

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +1

Query: 28  SALNEKNQIDKDLFFCCLIDFSCCC*YEYEITITKCLVCEVM 153
           S LN ++Q++   +   L +++    YEYE +I + ++CE++
Sbjct: 58  SILNSESQLEIPCYRMRLCNWTFSLSYEYERSIDELMICEMI 99


>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
          Length = 1232

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 293 VSCC-RCWVYRRCLHHRWVDVRVTLVARRLGPHLDKQQMNRQIFQYFIITSHTKHFV 126
           +SC  +C+V++     RW+  +V   A +       Q  N +   Y+ +T+    FV
Sbjct: 148 ISCAIKCFVFQNLAKLRWITRKVVDYAEKAKLRASAQARNSRSPVYYYVTNDLLEFV 204


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = -2

Query: 278  CWVYRRCLHHRWVDV------RVTLVARRLGPHLDKQQMNRQIFQY 159
            CW+ R+    +W++V      +V ++A + G H  KQ + R + +Y
Sbjct: 1495 CWIPRKMNRRQWIEVDLRRPFKVVMIATQ-GRHNAKQYVTRYVVRY 1539


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 221 PRLPLHQPTGGGGTFGRPSIGSS*R 295
           PRLP  +P   GG  GRP  G   R
Sbjct: 361 PRLPAREPVAEGGQEGRPISGEGPR 385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,984,312
Number of Sequences: 59808
Number of extensions: 372545
Number of successful extensions: 1601
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)