Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i03f
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077534-7|AAK71376.1|  319|Caenorhabditis elegans Prion-like-(q...    30   1.5  
AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical ...    29   2.0  
U70851-4|AAB09126.1|  266|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL031635-6|CAA21044.1|  761|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z66512-4|CAA91326.1|  329|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AF077534-7|AAK71376.1|  319|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 48
           protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -2

Query: 332 CDLSP--WHTRPPRGVSCCRCWVYRRC--LHHRWVDVRVTLVARRLGPHLDKQQMNR--Q 171
           CD+ P  W   P    S  +C V R+C  L HR   +++TL+   L P+  K   N+   
Sbjct: 108 CDIPPDLWCDSPQ---SAQQCGVQRQCDGLRHRRQPIKITLIYEALCPYCQKFIANQLGS 164

Query: 170 IFQYF 156
           +F  F
Sbjct: 165 VFNQF 169


>AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical
           protein Y116A8C.5 protein.
          Length = 675

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = -3

Query: 439 DEAAFDVVGFCASLIRLGRSKSWGMF 362
           DE+ FD+  F  +L+RLGR K++G+F
Sbjct: 153 DESKFDLNDFLVNLVRLGR-KNFGLF 177


>U70851-4|AAB09126.1|  266|Caenorhabditis elegans Hypothetical
           protein M02B7.2 protein.
          Length = 266

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 166 NICRFICCLSR*GPNLRATKVTLTSTHRWWRHLR 267
           NIC  + CL R G N R T    T T R +R  R
Sbjct: 232 NICEIVRCLGRDGHNYRITGSKDTMTRRVFRDAR 265


>AL031635-6|CAA21044.1|  761|Caenorhabditis elegans Hypothetical
           protein Y47D3B.9 protein.
          Length = 761

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 360 INIPQDLDRPSRINEAQNPTTSNAASSANDIITEHQLPDRAGGSNLHQTDDNER 521
           INI     +   + E        A+SS++D   + + PD  G  N   TD NE+
Sbjct: 493 ININSGFVKKEEMEEDTENHVEAASSSSSDERIKSETPDTYGSPNTSTTDQNEQ 546


>Z66512-4|CAA91326.1|  329|Caenorhabditis elegans Hypothetical
           protein F52H3.6 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 360 INIPQDLDRPSRINEAQNPTTSNAASSAN-DIITE 461
           +NIP  +DR   +N+  NP+ +   + A+ D++ E
Sbjct: 2   VNIPSFIDRLLSVNDTSNPSLTRCINEADIDVVIE 36


>U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical
           protein C23G10.8 protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 384 RPSRINEAQNPTTSNAASSANDIITEHQLPDRAGGSNLHQTDDNERDSQ 530
           R S  + A+   T   +SS    I+   +P R G SN       ERD +
Sbjct: 764 RRSLADTAERAETEGPSSSTGPSISAPPIPSRPGHSNYRMAAGRERDRE 812


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,231,212
Number of Sequences: 27780
Number of extensions: 265200
Number of successful extensions: 683
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)