Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i03f
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.4  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   3.2  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   3.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   7.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 302 PRGVSCCRCWVYRRCLHHRWVDV 234
           PR  +CCR W+ +     + +DV
Sbjct: 395 PRKKNCCRSWLSKFPTRSKRIDV 417


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 302 PRGVSCCRCWVYRRCLHHRWVDV 234
           PR  +CCR W+ +     + +DV
Sbjct: 395 PRKKNCCRSWLSKFPTRSKRIDV 417


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 445 MILSRNISYRIELVEATCTRQMTTKETARI 534
           MIL      R+E V  TC +++T+ E   +
Sbjct: 98  MILLEEYIPRVESVVETCKKEVTSTEGCEV 127


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 445 MILSRNISYRIELVEATCTRQMTTKETARI 534
           MIL      R+E V  TC +++T+ E   +
Sbjct: 72  MILLEEYIPRVESVVETCKKEVTSTEGCEV 101


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   SLSILRNLSALNEKNQIDKDLFFCCLIDFSC 96
           +L ++ NL+A+N  + +     +  L++F C
Sbjct: 353 TLPVVSNLTAMNVWDGVCMCFIYASLLEFVC 383


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   SLSILRNLSALNEKNQIDKDLFFCCLIDFSC 96
           +L ++ NL+A+N  + +     +  L++F C
Sbjct: 322 TLPVVSNLTAMNVWDGVCMCFIYASLLEFVC 352


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   SLSILRNLSALNEKNQIDKDLFFCCLIDFSC 96
           +L ++ NL+A+N  + +     +  L++F C
Sbjct: 373 TLPVVSNLTAMNVWDGVCMCFIYASLLEFVC 403


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   SLSILRNLSALNEKNQIDKDLFFCCLIDFSC 96
           +L ++ NL+A+N  + +     +  L++F C
Sbjct: 322 TLPVVSNLTAMNVWDGVCMCFIYASLLEFVC 352


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 412 FCASLIRLGRSKSWGMFINTTLSLSKRVT 326
           FCA +   G SK     +     LS RVT
Sbjct: 94  FCAEIAHGGSSKKRKSIVERAQQLSIRVT 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,444
Number of Sequences: 438
Number of extensions: 3222
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)